Locus 2319

Sequence ID 3L_DroMel_CAF1
Location 6,510,829 – 6,510,926
Length 97
Max. P 0.977024
window3580

overview

Window 0

Location 6,510,829 – 6,510,926
Length 97
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 93.30
Mean single sequence MFE -24.40
Consensus MFE -21.08
Energy contribution -21.20
Covariance contribution 0.12
Combinations/Pair 1.08
Mean z-score -2.81
Structure conservation index 0.86
SVM decision value 1.78
SVM RNA-class probability 0.977024
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6510829 97 + 23771897
GUGUGCAUAUCAGAGAACCGAAAGCAGAUCGGAUGAGUACACAGAAGGAAAAUUACAUAGUUAAAUAGCAAGAUGUGAAGCUGAGUAUCCUAGAUAA
((((((.((((.((....(....)....)).)))).))))))...((((....(((.(((((..(((......)))..))))).)))))))...... ( -23.50)
>DroSec_CAF1 2347 97 + 1
GUGUGCAUAUCAGAGAACCGAAAGGAGAUCGGAUGAGUACACAGAAGCAAAAUUACAUAGUUAAAUAGCUAGAUGUGAAGCUGAGUAUCCUAGAUAA
((((((.((((.((...((....))...)).)))).))))))...(((....((((((((((....)))))..))))).)))............... ( -24.60)
>DroSim_CAF1 2357 97 + 1
GUGUGCAUAUCAGAGAACCGAAAGGAGAUCGGAUGAGUACACAGAAGCAAAAUUACAUAGUUAAAUAGCUAGAUGUGAAGCUGAGUAUCCUAGAUGA
((((((.((((.((...((....))...)).)))).))))))...(((....((((((((((....)))))..))))).)))............... ( -24.60)
>DroYak_CAF1 2474 97 + 1
GUGUGCAUAUCAGAGAACCGAAAGCAGAUCGGAUGAGUACACAGCAGCGAAAUUGCAUAGUUAAAUAGCUAGUUGUUGAACUGAGUAUCCUGGAUUA
((((((.((((.((....(....)....)).)))).))))))..(((.((...(((.(((((.(((((....))))).))))).))))))))..... ( -24.90)
>consensus
GUGUGCAUAUCAGAGAACCGAAAGCAGAUCGGAUGAGUACACAGAAGCAAAAUUACAUAGUUAAAUAGCUAGAUGUGAAGCUGAGUAUCCUAGAUAA
((((((.((((.((...((....))...)).)))).))))))...........(((.(((((..(((......)))..))))).))).......... (-21.08 = -21.20 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:26 2006