| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,509,886 – 6,509,988 |
| Length | 102 |
| Max. P | 0.901398 |
| Location | 6,509,886 – 6,509,988 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 88.04 |
| Mean single sequence MFE | -39.00 |
| Consensus MFE | -32.17 |
| Energy contribution | -31.87 |
| Covariance contribution | -0.30 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.901398 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6509886 102 - 23771897 UGGUAUAAUAAUUGCGGUUACUCGCAGGAGGCUGCU--UCCUGCGGUCAUUGCGGUUAACCAAUUGGGCGGGCCUAGAAUGGCCCACACC--------UACACACAGGACAU ((((....((((((((((.((.(((((((((...))--))))))))).))))))))))))))...(((.(((((......))))).).))--------.............. ( -42.50) >DroSec_CAF1 1408 102 - 1 UGGUAUAAUAAUUGCGGUUACUCGCAGGAGGCUGCU--UCCUGCGGUCAUUGCGGUUAACCAAUUGGGCGGGCCUAGAAUAGCCCACACC--------UACACACAGAACAU ((((....((((((((((.((.(((((((((...))--))))))))).))))))))))))))...(((.((((........)))).).))--------.............. ( -38.00) >DroSim_CAF1 1417 102 - 1 UGGUAUAAUAAUUGCGGUUACUCGCAGGAGUCUGCU--UCCUGCGGUCAUUGCGGUUAACCAAUUGGGCGGGCCUAGAAUGGCCCACACC--------UACACACAGGACAU ((((....((((((((((.((.((((((((.....)--))))))))).))))))))))))))...(((.(((((......))))).).))--------.............. ( -40.80) >DroEre_CAF1 1435 102 - 1 UGGUAUAAUAAUUGCGGUUACUCGCAGGAGGCUGCU--UCCUGCGGUCAUUGCGGUUAACCAAUUGGGCGGGCCUCGAAUUGCCCACACC--------UACACAGAGGACAU ((((....((((((((((.((.(((((((((...))--))))))))).))))))))))))))..(((((((........)))))))..((--------(......))).... ( -39.90) >DroYak_CAF1 1496 112 - 1 UGGUAUAAUAAUUGCGGUUAUUCGCAGGAGGCUGCUUUUCCUGCGGUCAUUGCGGUUAACCAAUUGGGCGGGCCUCGAAUGGCCCACACCCACACACCCACACAGAGGACAU ((((....((((((((((...((((((((((.....))))))))))..))))))))))))))..((((.(((((......)))))...)))).....((.......)).... ( -41.80) >DroAna_CAF1 1389 98 - 1 UGGUAUAAUAAUUGCGGUUAUUUGCUGGAGGCUGCACAUCCUGCGGUCACUGCGGUUAACCAAUUGGGCGGGC-UCGACCGACUCACACC--------UACU----GGA-GC .(((...........(((((.((((.((.(((((((.....))))))).)))))).)))))...(((((((..-....))).)))).)))--------....----...-.. ( -31.00) >consensus UGGUAUAAUAAUUGCGGUUACUCGCAGGAGGCUGCU__UCCUGCGGUCAUUGCGGUUAACCAAUUGGGCGGGCCUAGAAUGGCCCACACC________UACACACAGGACAU ((((....((((((((((.((.(((((((.........))))))))).))))))))))))))...(((.((((........)))).).))...................... (-32.17 = -31.87 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:25 2006