Locus 2316

Sequence ID 3L_DroMel_CAF1
Location 6,509,067 – 6,509,163
Length 96
Max. P 0.509480
window3575

overview

Window 5

Location 6,509,067 – 6,509,163
Length 96
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 80.34
Mean single sequence MFE -23.83
Consensus MFE -16.02
Energy contribution -16.68
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 0.67
SVM decision value -0.05
SVM RNA-class probability 0.509480
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6509067 96 - 23771897
ACUCGACCACAAAAGCAUAAGUUGCCAAUUAAACUGGAAUGCUUUGCUGGUU--GCCC-GCAGCAGC---AAAGAGGAGCAGUGCUUCCCCC-CAACUGGAGA
.(((..((...(((((((.((((........))))...)))))))((((.((--(...-.)))))))---.....))..((((.........-..))))))). ( -24.60)
>DroSim_CAF1 612 95 - 1
ACUCGACCACAAAAGCAUAAGUUGCCAAUUAAACUGGAAUGCUUUGCUGGUU--GCCC-GCAGCAGC---AAAGAGGAGCAGAGCUUCC-CC-CAACCGGAGA
.(((..........(((.....)))..........((((.((((((((.(((--((..-...)))))---.......))))))))))))-..-......))). ( -25.00)
>DroEre_CAF1 621 95 - 1
ACUCGACCACAAAAGCAUAAGUUGCCAAUUAAACUGGAAUGCUUUGCUGGUU--GCCC-GCAGCAGC---AAAGAGGAGCAGAGUUUCC-AC-CAACUGAAGA
(((((((((..(((((((.((((........))))...)))))))..)))))--((((-........---.....)).)).))))....-..-.......... ( -22.42)
>DroWil_CAF1 59489 86 - 1
ACUAGACCACAAAAGCAUAAGUUGCCAAUUAAACUGGAAUGCUUUGCUGGUUUUGCCUUCCAACCAU---AAAGAGAAAAUGAG--------------GGAAC
...((((((..(((((((.((((........))))...)))))))..))))))..(((((.......---...........)))--------------))... ( -18.77)
>DroYak_CAF1 674 96 - 1
ACUCGACCACAAAAGCAUAAGUUGCCAAUUAAACUGGAAUGCUUUGCUGGUU--GCCC-GCAGCAGC---AAAGAGGAGCACAGCUUCC-CCUUAACUGAAGA
...((((((..(((((((.((((........))))...)))))))..)))))--)...-....(((.---.(((.(((((...)).)))-.)))..))).... ( -24.90)
>DroAna_CAF1 753 87 - 1
ACUCGACCACAAAAGCAUAAGUUGCCAAUUAAACUGGAAUGCUUUGCUGGCA--GCCC-GCAGCUGCGGCACAGAGG---CCACCCUCC-UCU-G--------
...........(((((((.((((........))))...)))))))((((.((--((..-...)))))))).((((((---.......))-)))-)-------- ( -27.30)
>consensus
ACUCGACCACAAAAGCAUAAGUUGCCAAUUAAACUGGAAUGCUUUGCUGGUU__GCCC_GCAGCAGC___AAAGAGGAGCAGAGCUUCC_CC_CAACUGGAGA
.((((((((..(((((((.((((........))))...)))))))..)))))..((......)).........)))........................... (-16.02 = -16.68 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:22 2006