Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,507,679 – 6,507,786 |
Length | 107 |
Max. P | 0.793245 |
Location | 6,507,679 – 6,507,786 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.51 |
Mean single sequence MFE | -36.98 |
Consensus MFE | -32.16 |
Energy contribution | -31.96 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.07 |
Mean z-score | -1.38 |
Structure conservation index | 0.87 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.793245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6507679 107 - 23771897 AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGCGGCUGUCGUUAGCGUU---------GGGUAGAUGU----GUGGCGUUUC ..(((.((((((((((((............(((....)))(((((((.....)))))))............)))))))))).(((((---------.....)))))----)).))).... ( -35.90) >DroSec_CAF1 2900 107 - 1 AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGCGGCUGUCGUUAGCGUU---------GGGUAGAUGU----GUUGCGUUUU ..((..((((((((((((............(((....)))(((((((.....)))))))............)))))))))).(((((---------.....)))))----))..)).... ( -36.90) >DroSim_CAF1 2920 107 - 1 AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGCGGCUGUCGUUAGCGUU---------GGGUAGAUGU----GUUGCGUUUC ..((..((((((((((((............(((....)))(((((((.....)))))))............)))))))))).(((((---------.....)))))----))..)).... ( -36.90) >DroEre_CAF1 2898 107 - 1 AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGUGGCUGUCGUUAGCGUU---------GGGUAUAUGU----GUUGUGCUUC ......(((((((((((((......(((..(((....)))(((((((.....)))))))...))).....))))))))))).))...---------(((((((...----..))))))). ( -37.20) >DroYak_CAF1 2927 120 - 1 AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGCGGUUGUCGUUAGCGUUGGCUGCAUUGGGUAGAUGUGUUUGUUGUGCUUC ....((((.......))))......((..((((((((.((.((((.(((.((..(((((..((.((((((((.....)))))))).))..))))))).))).))))))))))))))..)) ( -38.00) >consensus AUCGUGGCAACGGCAGCCAAAUUGAGAUACGCGACAACGCUGCGUAUGCGUAAUAUGCAAACAUCGUUGGCGGCUGUCGUUAGCGUU_________GGGUAGAUGU____GUUGCGUUUC ..((..((((((((((((............(((....)))(((((((.....)))))))............)))))))))).(((((..............)))))....))..)).... (-32.16 = -31.96 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:19 2006