Locus 2313

Sequence ID 3L_DroMel_CAF1
Location 6,507,099 – 6,507,212
Length 113
Max. P 0.500000
window3571

overview

Window 1

Location 6,507,099 – 6,507,212
Length 113
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.39
Mean single sequence MFE -27.14
Consensus MFE -22.90
Energy contribution -24.18
Covariance contribution 1.28
Combinations/Pair 1.03
Mean z-score -1.25
Structure conservation index 0.84
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6507099 113 + 23771897
AAAGGUGAUUCUCAGGCAGUUUUAGGGCACAAACUUUUCCACUCCUAUGAGAAAAGUUCUGACCCACACA------GAGACAGACUAAAAGGAUAUUUGAGACUGCUGGCAA-ACUUACA
....((((......(((((((((((((((..((((((((((......)).)))))))).)).))).....------........((....)).....)))))))))).....-..)))). ( -26.32)
>DroSec_CAF1 2421 113 + 1
AAAGGUGAUUCUCAGGCAGUUUUAGGGCACAAACUUUUCCACUCCUAUGAGAAAAGUUCUGACCCACACA------GAGACAGACUGAAAGGAUAGUUGAGACUGCUCGCAA-ACUUACA
....((((((..(..((((((((((((((..((((((((((......)).)))))))).)).)))...((------(.......)))..........)))))))))..)..)-).)))). ( -28.00)
>DroSim_CAF1 2414 113 + 1
AAAGGUGAUUCUCAGGCAGUUUUAGGGCACAAACUUUUCCACUCCUAUGAGAAAAGUUCUGACCCACACA------GAGACAGACUGAAAGGAUAGUUGAGACUGCUCGCAA-ACUUACA
....((((((..(..((((((((((((((..((((((((((......)).)))))))).)).)))...((------(.......)))..........)))))))))..)..)-).)))). ( -28.00)
>DroEre_CAF1 2362 113 + 1
AAAGGUGAUUCUCAGGCAGUUUUAGGGCACAAACUUUUCCACUCCUAUGAGAAAAGUUCUGACCCACACA------GAGACAGCCAGAAAGGAUAGUUGAGACUACUCGCAA-ACUUACA
....((((((((..(((.(((((.(((((..((((((((((......)).)))))))).)).))).....------))))).))))))).(..((((....))))..)....-..)))). ( -25.30)
>DroYak_CAF1 2339 120 + 1
AAAGGUGAUUCUCAGGCAGUUUUAGGGCACAAACUUUUCCACUCCUAUGAGAAAAGUUCUGACCCACACACAUAGAGACACAGACCGAAAGGAUAGUUGAGACUACUCGCAAAACUUGCA
...............((((((((.(((((..((((((((((......)).)))))))).)).))).........(((.......((....)).((((....)))))))..))))).))). ( -28.10)
>consensus
AAAGGUGAUUCUCAGGCAGUUUUAGGGCACAAACUUUUCCACUCCUAUGAGAAAAGUUCUGACCCACACA______GAGACAGACUGAAAGGAUAGUUGAGACUGCUCGCAA_ACUUACA
..((((........(((((((((((((((..((((((((((......)).)))))))).)).)))...................((....)).....))))))))))......))))... (-22.90 = -24.18 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:18 2006