Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,506,117 – 6,506,210 |
Length | 93 |
Max. P | 0.875714 |
Location | 6,506,117 – 6,506,210 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 73.90 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -13.03 |
Energy contribution | -12.63 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.53 |
Mean z-score | -2.20 |
Structure conservation index | 0.40 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875714 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6506117 93 + 23771897 UGAUUACCGCAGUAGUGCUGAGGGCGAGGAUUCCGGUGGUGGCGGUGGAGGAGGCGGUGGCCGAAGUGGAAGCGC---CGAAAGCGGUGAAGAGGA ...(((((((((.....))...((((....(((((.((((.((.((.......)).)).))))...))))).)))---)....)))))))...... ( -33.10) >DroVir_CAF1 1440 92 + 1 UGAUUAUCGUGGCAGUGGCGAUGGCGGCGAU---GGCGCUGCCGCUGGAGGCGGCUCUGCUGCUGGUGGCAACGAUGGGGAUAGUGGAGAUGAGG- (.(((((((..((((.(((...(((((((..---..)))))))((.....)).)))))))..)...((....)).....)))))).)........- ( -34.60) >DroSim_CAF1 1432 93 + 1 UGAUUACCGCAGUAGUGCUGAGGGCGAGGAUUCCGGUGGUGGCGGUGGAGGAAGCGGUGGCCGCAGUGGAAGCGC---AGAAAGCGGUGAAGAGGA ...(((((((((.....))....(((....((((.(((((.((.((.......)).)).)))))...)))).)))---.....)))))))...... ( -32.80) >DroEre_CAF1 1389 93 + 1 UGAUUACCGCAGUAGUGCCGAGGGCGAGGAUUCCGGUGGUGGCGGUGGAGGAGGCAGUGGCAGAGGUGGCAGCAC---UGAAAGCGGUGAUGAGGA (.((((((((.....(((((..(.(.....(((((.((....)).)))))..).)..)))))..((((....)))---)....)))))))).)... ( -31.50) >DroYak_CAF1 1314 93 + 1 UGAUUACCGCAGCAGUGCCGAGGGCGAGGAUUCCGGUGGUGGCGGUGGAGGAGGCGGUGGUAGAAGUGGCAGCGC---CGAAAGCGGUGAUGAGGA (.((((((((..((.(((((..(.((.......)).)..))))).)).....((((.((.((....)).)).)))---)....)))))))).)... ( -35.00) >DroAna_CAF1 20083 81 + 1 CGACUACCGGAGCAGUGCCGAGGGAGAGGACUCUGGUGGGGGAGGUGGCGGAAGCCG------AGA------UGA---CGACAGCGGCGACGAGAU ((.((((((((((....((...))....).)))))))))......((((....))))------...------...---))....((....)).... ( -26.20) >consensus UGAUUACCGCAGCAGUGCCGAGGGCGAGGAUUCCGGUGGUGGCGGUGGAGGAGGCGGUGGCAGAAGUGGCAGCGC___CGAAAGCGGUGAUGAGGA ...(((((((..((.(((((..(.((.......)).)..))))).))..................((....))..........)))))))...... (-13.03 = -12.63 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:13 2006