Locus 2308

Sequence ID 3L_DroMel_CAF1
Location 6,502,975 – 6,503,065
Length 90
Max. P 0.747575
window3563

overview

Window 3

Location 6,502,975 – 6,503,065
Length 90
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 88.99
Mean single sequence MFE -18.10
Consensus MFE -14.97
Energy contribution -15.75
Covariance contribution 0.78
Combinations/Pair 1.25
Mean z-score -2.11
Structure conservation index 0.83
SVM decision value 0.47
SVM RNA-class probability 0.747575
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6502975 90 + 23771897
-----UUUUUGCGGAG---GGGAACUAAAUAUUUUUUACGUUCCUUUUUUGUCCUCAGAUAUCCCUUUUAUAUAGCAUAUACACAUAUCCUUGUGCUA
-----..((((.((((---((((((((((.....)))).))))))).....))).)))).............(((((((............))))))) ( -18.80)
>DroSec_CAF1 37214 90 + 1
-----UUUUUGCGGAG---GGGAACUAAAUAUUUUCUACGCUCCUUUUUUGUCCUCAGAUAUCCCUUUUCUAUAGCAUAUACACAUAUCCUUGUGCUA
-----.....(((.((---..((........))..)).)))........((((....))))...........(((((((............))))))) ( -13.50)
>DroSim_CAF1 37637 90 + 1
-----UUUUUGCGGAG---GGGAACUAAAUAUUUUUUACGUUCCUUUUUUGUCCUCAGAUAUCCCUUUUCUAUAGCAUAUACACAUAUCCUUGUGCUA
-----..((((.((((---((((((((((.....)))).))))))).....))).)))).............(((((((............))))))) ( -18.80)
>DroEre_CAF1 39573 90 + 1
-----UUUUUGCGGAG---GGGAACUAAAUAUUUUUUACGUUCCUUUUUUGUCCUCAGAUAUCCCUUUUAUAUAGCAUAUACACAUAUCCUUGUGCUA
-----..((((.((((---((((((((((.....)))).))))))).....))).)))).............(((((((............))))))) ( -18.80)
>DroYak_CAF1 39063 98 + 1
CUUUUUUUUUGCGGGGAGAGGGAACUAAAUAUUUUUAACGUUCCCUUUUUGUCCUCAGAUAUCCCUUUUAUAUUGCAUAUACACAUAUCCUUGUGCUA
.........((((((((((((((((((((....))))..))))))))....))))).(((((.......))))))))....((((......))))... ( -22.80)
>DroAna_CAF1 38945 84 + 1
-----UUU---CGGA----GGGAACUAAAUAUUUUUUGAGCUCCCUUUUUGUCCUCAGAUAUCCUUUUUAUGCGGCGC--ACACAUAUCCUUGUGCUA
-----...---.(((----((((.((.((......)).)).))))....((((....)))))))............((--(((........))))).. ( -15.90)
>consensus
_____UUUUUGCGGAG___GGGAACUAAAUAUUUUUUACGUUCCUUUUUUGUCCUCAGAUAUCCCUUUUAUAUAGCAUAUACACAUAUCCUUGUGCUA
.......((((.(((....((((((((((.....)))).))))))......))).)))).............(((((((............))))))) (-14.97 = -15.75 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:10 2006