| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,497,843 – 6,497,942 |
| Length | 99 |
| Max. P | 0.632366 |
| Location | 6,497,843 – 6,497,942 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.38 |
| Mean single sequence MFE | -39.60 |
| Consensus MFE | -24.41 |
| Energy contribution | -24.33 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.632366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6497843 99 + 23771897 AACACCCACCUGGCCAGUGGUGGUGG------------CGUUGGUGGAAUCGGUGGCU---CCGAGCCAGCCGGUUGGAUGUGCCAUUGUUGUAAUUUAAUUGCACGUCGCUGC .....(((((..((((.......)))------------)...)))))((((((((((.---....)))).)))))).(((((((.((((........)))).)))))))..... ( -39.20) >DroSec_CAF1 32172 99 + 1 AACACCCACCUGGCCGGUGGUGGAGG------------CGGUGGUGGAAUCGGUGGCU---CCGAGCCAGCCGGUUGGAUGUGCCAUUGUUGUAAUUUAAUUGCACGUCGCUGC ..((((.(((.....)))))))...(------------((((.....((((((((((.---....)))).)))))).(((((((.((((........)))).)))))))))))) ( -39.70) >DroSim_CAF1 32596 87 + 1 AACACCCACCUGCCCAGUG------------------------GUGGAAUCGGUGGCU---CCGAGCCAGCCGGUUGGAUGUGCCAUUGUUGUAAUUUAAUUGCACGUCGCUGC .....(((((........)------------------------))))((((((((((.---....)))).)))))).(((((((.((((........)))).)))))))..... ( -34.10) >DroEre_CAF1 34365 93 + 1 AACUGCCACCUGGCCAGUGGUGGCGGUGG------------------AAUCGGCGGCU---CCGAGCCACCCGGUUGGAUGUGCCAUUGUUGUAAUUUAAUUGCACGUCGCUGC .(((((((((........)))))))))..------------------...((((((((---((.((((....))))))).((((.((((........)))).))))))))))). ( -40.90) >DroYak_CAF1 33653 111 + 1 AACUCCCACCUGGCCACUGGAGGCAGUGGAAUCAAUGGAAUCGCUGGAAUCGCCGGCU---CCGAGGCAGGCGGUUGGAUGUGCCAUUGUUGUAAUUUAAUUGCACGUCGCUGC ..(..((.((((.((((((....))))))......((((...(((((.....))))))---)))...)))).))..)(((((((.((((........)))).)))))))..... ( -40.60) >DroAna_CAF1 33240 91 + 1 -----CCACCUGGCGGGCGGCGGCGGCG------------------GGCUCGGCUCCUCCUCGGAGGCGGGCGGCUGGAUGUGCCAUUGUUGCGGCUUAAUUGCGCGUCGCUGC -----...((....))((((((((((((------------------((((((.((((.....)))).)))))(((.......)))....)))).((......)).))))))))) ( -43.10) >consensus AACACCCACCUGGCCAGUGGUGGCGG_________________GUGGAAUCGGCGGCU___CCGAGCCAGCCGGUUGGAUGUGCCAUUGUUGUAAUUUAAUUGCACGUCGCUGC ..............((((.............................(((((((((((......)))).))))))).(((((((.((((........)))).))))))))))). (-24.41 = -24.33 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:08 2006