Locus 2304

Sequence ID 3L_DroMel_CAF1
Location 6,482,138 – 6,482,228
Length 90
Max. P 0.526775
window3559

overview

Window 9

Location 6,482,138 – 6,482,228
Length 90
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 83.64
Mean single sequence MFE -19.28
Consensus MFE -13.09
Energy contribution -14.12
Covariance contribution 1.03
Combinations/Pair 1.05
Mean z-score -1.91
Structure conservation index 0.68
SVM decision value -0.01
SVM RNA-class probability 0.526775
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6482138 90 - 23771897
CUG--------UGUGCGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG--UGCCACUUUU
..(--------((.(((.....((((((((((((((.....)).))))))))))))..........(((((((......)))).))).--)))))).... ( -22.40)
>DroGri_CAF1 16644 86 - 1
GUA--------UGUGAAUGUACGCAUUUGGCAGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCACAUAUUAGAAAUGCUU--UCCU----UU
(((--------(((((...(((((((..(........)..)))))))......(((......)))....))))))))...........--....----.. ( -13.70)
>DroSim_CAF1 16744 90 - 1
CUG--------UGUGUGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG--UGCCAUUUUU
..(--------((.(..(.(((((((((((((((((.....)).)))))))))))).............((((......)))).))))--..)))).... ( -18.90)
>DroEre_CAF1 17305 92 - 1
CAG--------UGUGUGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUGUGUGCCACUUUU
.((--------((.(..(((((((((((((((((((.....)).)))))))))))).............((((......)))).)))).)..)))))... ( -22.40)
>DroYak_CAF1 17400 98 - 1
CAGUCAGCUUGUGUGUGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG--UGCCACUUUU
..........(((.(..(.(((((((((((((((((.....)).)))))))))))).............((((......)))).))))--..)))).... ( -21.10)
>DroAna_CAF1 17811 81 - 1
---------------GGCU--GGCAUUUUGUUGCCAACUUAUGUGCCAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG--UGCUAUUUUU
---------------(((.--.(((((((((.((((.....)).)).)))))))))..........(((((((......)))).))).--.)))...... ( -17.20)
>consensus
CUG________UGUGUGUUAACGCAUUUUGUUGCCAACUUAUGUGUAAUAAAAUGUAAUAAAAUAAAACUCUCAUAUUAGAGAUGUUG__UGCCACUUUU
......................((((((((((((((.....)).))))))))))))..........(((((((......)))).)))............. (-13.09 = -14.12 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:29:06 2006