Locus 2299

Sequence ID 3L_DroMel_CAF1
Location 6,465,851 – 6,465,968
Length 117
Max. P 0.685841
window3550

overview

Window 0

Location 6,465,851 – 6,465,968
Length 117
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 75.04
Mean single sequence MFE -46.95
Consensus MFE -19.90
Energy contribution -20.49
Covariance contribution 0.59
Combinations/Pair 1.41
Mean z-score -2.03
Structure conservation index 0.42
SVM decision value 0.32
SVM RNA-class probability 0.685841
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6465851 117 - 23771897
AAAAGCAAGAGAGCUAUGCGAAAGCCUUUGAGUUGUCCAUGGAACUGCUUAAGUCCGCUGCUGGCGAGGAAGCAGCCAAGGAGGCACAGACUAUAUCGGCUCUUUUGGCUCGGUCUG
...((((((((((((..((....)).((((.(((.(((.(((..((((((.....(((.....)))...))))))))).)))))).)))).......))))))))).)))....... ( -38.70)
>DroVir_CAF1 594 117 - 1
AGCAGCAGGAGAGUUAUGCGAAAGCCUUUGAUCUGUCCAUGCAGCUGCUGCGUGAUGCCACUGUAGAUACAGCUGCAAAGGAAGCCAAGGAAAUUGCAGAACUGUUGGCGCGCUCGG
(((.((..((.((((.(((((...((((.(.....(((.(((((((((((((((....))).))))...))))))))..)))..).))))...))))).)))).)).))..)))... ( -42.10)
>DroPse_CAF1 615 117 - 1
AGAAGCAGGAGAGCUAUGCGAAAGCCUUUGAGCUCUCCAUGGAUCUGCUGAGGGAUGCGGUCGGCGAGCAGGCGGUGGAGGAGGCGCGGCAGAUCUGCGCUCUGCUCGCCCGAUCCG
.......((((((((..((....)).....))))))))..((((((((........)))...(((((((((((.(..((....((...))...))..))).))))))))).))))). ( -55.90)
>DroYak_CAF1 588 117 - 1
AAAAGCAAGAGAGCUAUGCGAAAGCCUUUGAGUUGUCCAUGGAACUGCUCAAGUCCGCUACCGGCGAGGAAGCUGCCAAGGAGGCACAGACCAUUUCGGCUCUUUUGGCUCGGUCUG
...((((((((((((..((....))..((((((..((....))...))))))(((.(((.((.....)).)))((((.....))))..)))......))))))))).)))....... ( -38.80)
>DroAna_CAF1 588 117 - 1
AGAAGCAGGAGAGUUACGCGAAAGCCUUCGAACUGUCCAUGGAUCUGCUGAAGUCUGCGAGUGGCGAGGAGGCUUCCAAGGAGGCCAAGGAAAUAUCCGCCUUGCUCGCUCGAUCGG
.......(((.((((..((....)).....)))).)))...((((.((........))(((((((((((.((((((....))))))..(((....))).)))))).))))))))).. ( -50.30)
>DroPer_CAF1 615 117 - 1
AGAAGCAGGAGAGCUAUGCGAAAGCCUUUGAGCUCUCCAUGGAUCUGCUGAGGGAUGCGGUCGGCGAGCAGGCGGUGGAGGAGGCGCGGCAGAUCUGCGCUCUGCUCGCCCGAUCCG
.......((((((((..((....)).....))))))))..((((((((........)))...(((((((((((.(..((....((...))...))..))).))))))))).))))). ( -55.90)
>consensus
AGAAGCAGGAGAGCUAUGCGAAAGCCUUUGAGCUGUCCAUGGAUCUGCUGAAGGAUGCGACCGGCGAGGAAGCUGCCAAGGAGGCACAGAAAAUAUCCGCUCUGCUCGCUCGAUCCG
.......(((.((((..((....)).....)))).)))..(((((.(((......(((.....)))....)))(((((..(.(((.............))).)..))))).))))). (-19.90 = -20.49 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:58 2006