Locus 2297

Sequence ID 3L_DroMel_CAF1
Location 6,464,619 – 6,464,715
Length 96
Max. P 0.774806
window3547

overview

Window 7

Location 6,464,619 – 6,464,715
Length 96
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 81.48
Mean single sequence MFE -18.02
Consensus MFE -13.83
Energy contribution -13.67
Covariance contribution -0.16
Combinations/Pair 1.35
Mean z-score -1.70
Structure conservation index 0.77
SVM decision value 0.54
SVM RNA-class probability 0.774806
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6464619 96 - 23771897
CCAUUGAAUUCUUAGCCAGCCUUAAGGCAUCAAUAACUUUGCCUUGACCCAGCAUUACUUCAAUGAUGAUCUAAAA-AAU---AUU-GUUAGUUCAUACAU
.(((((((......((.....((((((((..........))))))))....)).....)))))))((((.((((..-...---...-.)))).)))).... ( -19.00)
>DroVir_CAF1 6037 99 - 1
CCAUUGAGUUUUUGGCCAGCCGCAGCGCAUCUAUGACCUUGCCCUGGCCCAGCAUGACCUCAAUUAUGAUCUACAAACAACAAAUUAGUAAG-GGAUUCA-
....(((((((((((((((..((((.(((....)).).)))).))))))...(((((......)))))......................))-)))))))- ( -20.40)
>DroSec_CAF1 1911 96 - 1
CCAUUGAGUUUUUAGCCAGCCUUAAGGCAUCAAUAACUUUGCCUUGACCCAGCAUUACUUCAAUAAUGAUCUAAAA-AAU---UUU-GUUAGUUCAUACAC
..(((((((.....((.....((((((((..........))))))))....))...)).))))).((((.((((..-...---...-.)))).)))).... ( -16.00)
>DroSim_CAF1 1914 96 - 1
CCAUUGAGUUUUUAGCCAGCCUUAAGGCGUCAAUAACUUUGCCUUGACCCAGCAUUACCUCAAUGAUGAUCUAAAA-AAU---AUU-GUUAGUUCAUACAC
.(((((((......((.....((((((((..........))))))))....)).....)))))))((((.((((..-...---...-.)))).)))).... ( -20.20)
>DroEre_CAF1 1925 83 - 1
CCAAUGAGUUUUUAGCCAGCCUUAAGGCAUCAAUAACUUUGCCUUGACCCAGCAUUACUUCAAUGAUGAUCUAAAA-A-----------------AUACAU
...(((..(((((((...(..((((((((..........))))))))..)..(((((......)))))..))))))-)-----------------...))) ( -14.50)
>DroYak_CAF1 1928 95 - 1
CCAUUGAGUUUUUAGCUAGCCUUAGGGCAUCGAUAACUUUGCCUUGACCCAGCAUCACUUCAAUGAUGAUCUAAAA-A-U---AUA-GUUAACGUAUACUU
.....((((..((((((((..((((((((..........))))))))..)..(((((......)))))........-.-.---.))-))))).....)))) ( -18.00)
>consensus
CCAUUGAGUUUUUAGCCAGCCUUAAGGCAUCAAUAACUUUGCCUUGACCCAGCAUUACUUCAAUGAUGAUCUAAAA_AAU___AUU_GUUAGUUCAUACAU
.(((((((......((.....((((((((..........))))))))....)).....))))))).................................... (-13.83 = -13.67 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:55 2006