Locus 2296

Sequence ID 3L_DroMel_CAF1
Location 6,462,368 – 6,462,465
Length 97
Max. P 0.607200
window3546

overview

Window 6

Location 6,462,368 – 6,462,465
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 85.77
Mean single sequence MFE -24.54
Consensus MFE -18.48
Energy contribution -17.92
Covariance contribution -0.56
Combinations/Pair 1.19
Mean z-score -1.63
Structure conservation index 0.75
SVM decision value 0.15
SVM RNA-class probability 0.607200
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6462368 97 + 23771897
UUUCUUAUCGCUGUUGUUUGUAUACUAAACAGCUGAUAGGGCUGGCAAAAAUACCGCUGAUAGCAAUAGUGAUGGCAAAUAAUAGCGUGAGUUGGAA
...((((.(((((((((((((.(((((..(((((.....)))))...........((.....))..)))))...)))))))))))))))))...... ( -30.80)
>DroSec_CAF1 200059 97 + 1
UUUCUUAUCGCUAUUGUUUGUAUACUAAACAGCUGAUAGGGCUGGCAAAAACACCACUGAUAGCAAUAGUGAUGGCAAAAAAAAGCGUGAGUGGGAA
.(((((((((((((((((((.....))))).((((.(((((.((.......)))).))).))))))))))))))..........((....)))))). ( -24.40)
>DroSim_CAF1 205871 97 + 1
UUUCUUAUCGCUGUUGUUUGUAUACUAAACAGCUGAUAGGGCUGGCAAAAACACCACUGAUAGCAAUAGUGAUGGCAAAUAAACGCGUGAGUUGGAA
.((((..((((((((((((((.(((((....((((.(((((.((.......)))).))).))))..)))))...)))))).)))).))))...)))) ( -24.90)
>DroEre_CAF1 208951 97 + 1
UUUCUUAUCGGUGUUGUUUGUAUACUAAACAGCUGAUAGGGCUGACGAAAAUACCGCUGAUAGCGAUGGUGAUGGCAAAUGAACGCGUGAGUUGUGA
...(((((..(((((((((((.(((((..(((((.....)))))..........(((.....))).)))))...)))))).))))))))))...... ( -23.80)
>DroYak_CAF1 216655 81 + 1
UUUCUUAUCGGUGUUGUUUGUAUACUAAACAGCUGACAGGGCUGGCAAAAAUACCGCUGAUAGCGAUAGUGAUGGCAAUUG----------------
..(((((((((((((.(((((........(((((.....))))))))))))))))((.....))))))).)).........---------------- ( -18.80)
>consensus
UUUCUUAUCGCUGUUGUUUGUAUACUAAACAGCUGAUAGGGCUGGCAAAAAUACCGCUGAUAGCAAUAGUGAUGGCAAAUAAAAGCGUGAGUUGGAA
....((((((((((((((((.....))))).((((.(((((.((.......)))).))).)))))))))))))))...................... (-18.48 = -17.92 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:54 2006