Locus 2295

Sequence ID 3L_DroMel_CAF1
Location 6,457,809 – 6,457,921
Length 112
Max. P 0.782230
window3545

overview

Window 5

Location 6,457,809 – 6,457,921
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 77.13
Mean single sequence MFE -23.40
Consensus MFE -13.11
Energy contribution -14.93
Covariance contribution 1.81
Combinations/Pair 1.17
Mean z-score -2.06
Structure conservation index 0.56
SVM decision value 0.56
SVM RNA-class probability 0.782230
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6457809 112 - 23771897
UGGCAAAUUUUUAAACUCAUCCUUAUUACUUUUUAGGUAAUAGUAUCAAAUAUUAAUUUGAUGAUUUUCGUUUCCUAUAUUUUAGGGAACGAUAGUCUAUCGAAUCCAAGCC
.(((..................((((((((.....))))))))............(((((((((((.((((((((((.....)))))))))).)))).)))))))....))) ( -30.90)
>DroSec_CAF1 195466 111 - 1
UGGCAAGCUUUUAAACUCACCCUUAUUAUUUUUGAGGUAAUAGUAUCA-GUAUUAAUUUGACGAGUUUCAUUUCCUAUAUCUUAGGGAACGCUAGUCUAUCGAAUCCAAGCC
.(((.(((....((((((..(((((.......)))))........(((-(.......)))).))))))..(((((((.....))))))).))).)))............... ( -22.80)
>DroSim_CAF1 201288 111 - 1
UGGCAAGCUUUUAAACUCAUUCUUAUUAUUUUUUAGGUAAUAGUAUCA-AUAUUAAUUUGAUGAGUUUCAUUUCCUAUAUCUUAGGGAACGAUAGUCUAUCGAAUCCAAGCC
.(((........((((((....((((((((.....)))))))).((((-(.......)))))))))))..(((((((.....)))))))(((((...))))).......))) ( -22.20)
>DroYak_CAF1 211789 96 - 1
UAUUAAACCCUUAAAGUCGUCA---------UUUAAGUAAUA-------AGAUCGAUUCGAUGAGCUUCGUUUGCUAUUUGUUAGAGAAGGAGAGUCUAUCGAUUCCAAACU
.........((((((.......---------)))))).....-------.....((.((((((..((((.((..(((.....)))..)).)).))..)))))).))...... ( -17.70)
>consensus
UGGCAAACUUUUAAACUCAUCCUUAUUAUUUUUUAGGUAAUAGUAUCA_AUAUUAAUUUGAUGAGUUUCAUUUCCUAUAUCUUAGGGAACGAUAGUCUAUCGAAUCCAAGCC
.(((..................((((((((.....))))))))............((((((((..((((.(((((((.....))))))).)).))..))))))))....))) (-13.11 = -14.93 +   1.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:53 2006