| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,456,842 – 6,456,942 |
| Length | 100 |
| Max. P | 0.850491 |
| Location | 6,456,842 – 6,456,942 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 73.55 |
| Mean single sequence MFE | -21.95 |
| Consensus MFE | -16.45 |
| Energy contribution | -17.28 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.79 |
| SVM RNA-class probability | 0.850491 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6456842 100 - 23771897 ---AUAAACUACUUUCAAAGCGUACAAUUUUU-UCUCAGUGCACC-UUGCAUGGCGAAGUUGGAGUCGAAGUCUGUUUUAUGCUUAUGAUUUACGUACUUCGGCU ---.....................(((((((.-((...((((...-..)))))).))))))).(((((((((.(((.((((....))))...))).))))))))) ( -21.40) >DroSec_CAF1 194502 101 - 1 ---AUAAAAUGCUUGAAAAGCGUACAAUUUUUUCCUCAGUGCACU-UUGCAUUGCGAAGUUGGAGUCGAAGUCUGUUUUAUGCUUAUGAUUUACGUACUCCGGCU ---.....(((((.....)))))...........(.((((((...-..)))))).).((((((((((((((((.((.....))....))))).)).))))))))) ( -27.70) >DroSim_CAF1 200324 101 - 1 ---AUAAAAUGCUUUCAAAGUGUACAAUUUUUUUCUCAGUGCACU-UUGCAUUGCGAAGUUGGAUUCGAAGUCUGUUUUAUGCUUAUGAUUUACGUACUCCGGCU ---......(((..(((((((((((.............)))))))-))).)..))).(((((((..(((((((.((.....))....))))).))...))))))) ( -26.42) >DroEre_CAF1 203395 102 - 1 UUCACAGACAGCCUUCAAAGUCCCCUAU--UUUUCUCGGUGCACU-UGGCAUUGCACAGUUGGAGUCGCAGUCCGUUUUAUGCUUAUGAUUUACGUACUCCGGCU .........((((...............--........(((((..-......)))))....(((((((.((..(((.........)))..)).)).))))))))) ( -20.30) >DroYak_CAF1 210759 90 - 1 UUCAA-------CUGCAAAU-----AAA--UGUUCUCUGUGCACU-UGGCAUCGUAAAGUUGGACUCGCAGUCUGUUUUAUGCUUAUGAUUUACGUACUCCGGCU .((((-------.((((...-----...--.........)))).)-)))........(((((((..((.((((.((.....))....))))..))...))))))) ( -12.96) >DroAna_CAF1 197740 82 - 1 ----------------------AACUAUCUUU-UUCCGGUGUAGUCUUUAGUUUCGGAGCUGGAGUCGAGGUCUGUUUUAUGCUUAUGAUUUACGUACUCCGGCU ----------------------..........-.(((((..............)))))(((((((((((((((.((.....))....))))).)).)))))))). ( -22.94) >consensus ___AUAAA_UGCUUUCAAAG_GUACAAUUUUUUUCUCAGUGCACU_UUGCAUUGCGAAGUUGGAGUCGAAGUCUGUUUUAUGCUUAUGAUUUACGUACUCCGGCU ....................................((((((......))))))...((((((((((((((((.((.....))....))))).)).))))))))) (-16.45 = -17.28 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:52 2006