Locus 2292

Sequence ID 3L_DroMel_CAF1
Location 6,455,226 – 6,455,325
Length 99
Max. P 0.743839
window3541

overview

Window 1

Location 6,455,226 – 6,455,325
Length 99
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 81.30
Mean single sequence MFE -16.31
Consensus MFE -12.74
Energy contribution -13.10
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.56
Structure conservation index 0.78
SVM decision value 0.46
SVM RNA-class probability 0.743839
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6455226 99 - 23771897
AUA-----CAAAUAAACAAACCAACCAAAGAAAAAAAAGGAAA---CCAACAAGAAACGAGCAUUUUCAUGGGGACAGCUAAUUGGCUGCUGUGACAUUAAAUGCCG
...-----..............................(....---)..........((.((((((((((((...(((((....)))))))))))....)))))))) ( -16.10)
>DroVir_CAF1 267229 96 - 1
AAAAGUUACAACCAAAAAAAC-AGCAGA---------GUUAAAACAACAACAGCAAGUGAAGAUUUUCAUG-GGACAGCUAAUUGGCUGCUGUGACAUUAAAUGCCG
....((((((.((........-.((...---------(((........))).))..(((((....))))))-)..(((((....))))).))))))........... ( -16.10)
>DroSec_CAF1 192923 98 - 1
AUA-----CAAAUAAACAAACCAACAAA-AAAAAAAAAGAAAA---CCAACAAGAAACGAGCAUUUUCAUGGGGACAGCUAAUUGGCUGCUGUGACAUUAAAUGCCG
...-----....................-..............---...........((.((((((((((((...(((((....)))))))))))....)))))))) ( -15.30)
>DroSim_CAF1 198754 95 - 1
AUA-----CAAAUAAACAAACCAACAAA-AA---AAAAGGAAA---CCAACAAGAAACGAGCAUUUUCAUGGGGACAGCUAAUUGGCUGCUGUGACAUUAAAUGCCG
...-----....................-..---....(....---)..........((.((((((((((((...(((((....)))))))))))....)))))))) ( -16.10)
>DroEre_CAF1 201757 90 - 1
AUA-----CAAAUAAACAAACCG---------AAAAAAGGAAA---CCAACAAGAAACGAGCAUUUUCAUGGGGACAGCUAAUUGGCUGCUGUGACAUUAAAUGCCG
...-----............((.---------......))...---...........((.((((((((((((...(((((....)))))))))))....)))))))) ( -16.50)
>DroAna_CAF1 196180 86 - 1
AUA-----AAA--AAGGAAACCGGCA-----------AUGAAA---ACAACAAGAAACGAGCAUUUUCAUGGGGACAGCUAAUUGGCUGCUGUGACAUUAAAUGCCG
...-----...--..(....)(((((-----------((((((---(................))))))).(..(((((.........)))))..)......))))) ( -17.79)
>consensus
AUA_____CAAAUAAACAAACCAACAAA______AAAAGGAAA___CCAACAAGAAACGAGCAUUUUCAUGGGGACAGCUAAUUGGCUGCUGUGACAUUAAAUGCCG
.........................................................((.((((((((((((...(((((....)))))))))))....)))))))) (-12.74 = -13.10 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:49 2006