Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,450,881 – 6,450,979 |
Length | 98 |
Max. P | 0.626811 |
Location | 6,450,881 – 6,450,979 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.80 |
Mean single sequence MFE | -15.57 |
Consensus MFE | -8.68 |
Energy contribution | -8.90 |
Covariance contribution | 0.22 |
Combinations/Pair | 1.11 |
Mean z-score | -1.79 |
Structure conservation index | 0.56 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626811 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6450881 98 + 23771897 AUUAAUUGGCCAAAACAAGCGGC-G---AAUAAAUUAAACUGAAAAUAAUGAAUAAACACUUAAAUUUUGGCAUUUAGCUAGAAAUAUGCCGCAAUUAGUCA .....(((.......)))(((((-(---.....................((......))......(((((((.....)))))))...))))))......... ( -15.80) >DroVir_CAF1 262661 94 + 1 AUUAAUUGCUCAAGACAAACAAC-AAGCAAUAAAUAAAAAUG---CUAAUAAAUAGA----CACAUUUUGGCAUUUAGCUAGAAAAAUACCGCAAUUAGUCA (((((((((..............-.((((...........))---))..........----....(((((((.....))))))).......))))))))).. ( -15.80) >DroGri_CAF1 194726 95 + 1 AUUAAUUGCCCAAGACAAACAGCUAGGCAAUAAAUAAAAAUG---CUAAUAAAUAUA----CAUAUUUUGGCAUUCGGCUAGAAAAAUACCGCAAUUAGUCA (((((((((................((((...........))---))..........----....(((((((.....))))))).......))))))))).. ( -15.30) >DroSim_CAF1 194434 98 + 1 AUUAAUUGGCCAAAACAAGCGGC-G---AAUAAAUUAAACUGAAAAUAAUGAAUAAACACUCAAAUUUUGGCAUUUAGCUAGAAAUAUGCCGCAAUUAGUCA .....(((.......)))(((((-(---.....................(((........)))..(((((((.....)))))))...))))))......... ( -17.70) >DroMoj_CAF1 213704 94 + 1 AUUAAUUGGCUAAGACAAACAGC-GGGCAAUAAAUAAAAAUG---CUAAUAAAUAGA----CACAUUUUGGCAUUUAGCUAGAAAAAUACGACAAUUAGUCA .....(((((((((.......(.-...)............((---((((........----......)))))))))))))))........(((.....))). ( -13.94) >DroAna_CAF1 191603 85 + 1 AUUAAUUGGCCGAAACAAGGGGC-G---CACAAAUA-AG------CUGAUGAAUUAAC------AUUUUGGCAUUUAGCUAGAAAAAUACCACAAUUAGUCA (((((((((((.........)))-(---(.......-.)------)............------.(((((((.....)))))))........)))))))).. ( -14.90) >consensus AUUAAUUGGCCAAAACAAACAGC_G___AAUAAAUAAAAAUG___CUAAUAAAUAAA____CAAAUUUUGGCAUUUAGCUAGAAAAAUACCGCAAUUAGUCA (((((((((((.........)))..........................................(((((((.....)))))))........)))))))).. ( -8.68 = -8.90 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:48 2006