| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,438,468 – 6,438,563 |
| Length | 95 |
| Max. P | 0.861676 |
| Location | 6,438,468 – 6,438,563 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 70.56 |
| Mean single sequence MFE | -15.33 |
| Consensus MFE | -6.02 |
| Energy contribution | -6.13 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.861676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6438468 95 + 23771897 ACCCUGUUACUCUUCAAUUUAUUGCUA------AACACGUCCUCUCAUUGAACCAUUAAAUUAAUAGGAGAAUCCCAUUUUUAUGGCACUUCCUG------CCAACU---- ..(((((((...((((((.....((..------.....))......)))))).........)))))))...............(((((.....))------)))...---- ( -11.30) >DroSec_CAF1 176344 95 + 1 ACCCAGUUACUCUUCCAUUUAUUGCUA------AACACGUCCUCUCGUCGAACCAUUAAAUGAAUAGGAGAAUCCCAUUUUUAUGGCACUUCCUG------CCAACU---- .........(((((.((((((.((...------...(((......))).....)).))))))...))))).............(((((.....))------)))...---- ( -15.60) >DroSim_CAF1 182196 95 + 1 ACCCAGUUACUCUUCCAUUUAUUGCUA------AACACGUCCUCUCGUCGAACCAUUAAAUUAAUAGGAGAAUCCCAUUUUUAUGGCACUUCCUG------CCAACU---- .........(((((..(((((.((...------...(((......))).....)).)))))....))))).............(((((.....))------)))...---- ( -12.50) >DroEre_CAF1 181517 88 + 1 -------UCGUCUUCCAUCUAUUGCUA------GACACGUCCUUUCAUCGAACCAUUAAAUUAAUAGGAGAUUGCCAUUUUUAUGGCACUUCCUG------GACACU---- -------..((((..((.....))..)------)))..((((.(((...))).............(((((..((((((....)))))).))))))------)))...---- ( -21.90) >DroYak_CAF1 191130 98 + 1 -------UCAUCUUCAAUUCAUGACUA------GACACAUCCUUUCAUGGAACCAUUAAAUUAAUAGGAGAAUGCCAUUUUUAUGGCACUUCCCACCUUAUGUAACUUAUG -------..........(((((((..(------(.......)).)))))))...............((.(((((((((....)))))).)))))................. ( -18.50) >DroAna_CAF1 179570 88 + 1 UCCCAGGAAA------AAGAAAUCCUAAAAGCCAACCCUACCAUUAAUCGAAUCGUUUUAAUAAUAGGAAAUCCUCAUUUUUAUGGCUCUUCCA----------------- ....((((..------......))))...(((((..((((..(((((.((...))..)))))..))))(((........))).)))))......----------------- ( -12.20) >consensus ACCCAGUUACUCUUCCAUUUAUUGCUA______AACACGUCCUCUCAUCGAACCAUUAAAUUAAUAGGAGAAUCCCAUUUUUAUGGCACUUCCUG______CCAACU____ ................................................................((((((....((((....))))...))))))................ ( -6.02 = -6.13 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:47 2006