| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 626,821 – 626,911 |
| Length | 90 |
| Max. P | 0.566395 |
| Location | 626,821 – 626,911 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 86.77 |
| Mean single sequence MFE | -25.59 |
| Consensus MFE | -16.80 |
| Energy contribution | -16.24 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.566395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 626821 90 - 23771897 UGUGGAAAUCGAUGUGUGUG----------UGCAUGCUGAUUAGCACCUUGGCAUGUGCUAUAU--GCCAGAAGCUACAUACAUACAUAUAUACUAAGCGAU .......((((..(((((((----------((.(((.....((((...(((((((((...))))--)))))..))))....))).)))))))))....)))) ( -27.10) >DroSec_CAF1 38306 86 - 1 UGUGGAAAUCGAUGUGUGUG----------UGCAUGCUGAUUAGCACCUUGGAAUGUGCUAUAU--GCCAGAAGCCACAUACA----UACAUACUAAGCGAU .((........(((((((((----------.((...(((..((((((........))))))...--..)))..))))))))))----).........))... ( -24.13) >DroSim_CAF1 36572 86 - 1 UGUGGAAAUCGAUGUGUGUG----------UGCAUGCUGAUUAGCACCUUGGCAUGUGCUAUAU--GCCAGAAGCCACAUACA----UAUAUACUAAGCGAU .((........(((((((((----------.((.((((....))))..(((((((((...))))--)))))..))))))))))----).........))... ( -27.53) >DroEre_CAF1 40432 82 - 1 UGUGGAAAUCGAUGUGUGUG----------UGCAUGCUGAUUAGCACCUUGGCAUGUGCUAUAU--GCCAGUAGCUACA--------UACAUACUAAGCGAU .......((((..(((((((----------(((((((..(........)..))))).(((((..--....)))))..))--------)))))))....)))) ( -26.40) >DroYak_CAF1 42697 96 - 1 UGUGGAAAUCGAUGUGUGUGUGUGUGUUUGUGUAUGCUGAUUAGCACCUUGGCAUGUGCUAUAUGUGCCAGAAGCUAUA--GC----UAUGUACUAAGCGAU .......((((..(((..((..(((((..(..(((((..(........)..)))))..).)))))..)....(((....--))----))..)))....)))) ( -22.80) >consensus UGUGGAAAUCGAUGUGUGUG__________UGCAUGCUGAUUAGCACCUUGGCAUGUGCUAUAU__GCCAGAAGCUACAUACA____UAUAUACUAAGCGAU .......((((..(((((((...........((...(((..((((((........)))))).......)))..))............)))))))....)))) (-16.80 = -16.24 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:52 2006