| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,438,004 – 6,438,112 |
| Length | 108 |
| Max. P | 0.689128 |
| Location | 6,438,004 – 6,438,112 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.18 |
| Mean single sequence MFE | -23.42 |
| Consensus MFE | -14.29 |
| Energy contribution | -14.02 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.689128 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6438004 108 + 23771897 GGUUCUCUGCCGCA-GAAUUGACAGCUGAAUAAAAUGUUAUUAUAUUUACACCAUAAUUUGCAUGGCAAUUAAUCAAAUGGCAUGCAAAAUUCGACAACGGCCACGGA-A---------- ..((((..((((..-(((((............((((((....))))))..........(((((((.((.((....)).)).)))))))))))).....))))...)))-)---------- ( -21.10) >DroVir_CAF1 239565 106 + 1 ----GUUUGCCGCUCAAAUUGACAGCUGAAUAAAAUGUUAUUAUAUUUACACCAUAAUUUGCAUGGCAAUUAAUCAAAUGGCAUGCAAAAUUCUGUCGCUUCGACGGCAA---------- ----..((((((.((.((.((((((.......((((((....)))))).........((((((((.((.((....)).)).))))))))...)))))).)).))))))))---------- ( -29.10) >DroPse_CAF1 225584 118 + 1 CGCUCUCUGCCACA-CAAUUGACAGCUGAAUAAAAUGUUAUUAUAUUUACACCAUAAUUUGCAUGGCAAUUAAUCAAAUGGCAUGCAAAAUUCGACAACACACAAAAU-GCCAGGCCAGA .....((((((.((-....))...(.(((((.((((((....)))))).........((((((((.((.((....)).)).))))))))))))).)............-....)).)))) ( -19.50) >DroGri_CAF1 180641 106 + 1 ----AUUUGCCGCUCAAAUUGACAGCUGAAUAAAAUGUUAUUAUAUUUACACCAUAAUUUGCAUGGCAAUUAAUCAAAUGGCAUGCAAAAUUCUGUCACAUCGACGGCAA---------- ----..((((((.((....((((((.......((((((....)))))).........((((((((.((.((....)).)).))))))))...))))))....))))))))---------- ( -28.70) >DroMoj_CAF1 197601 105 + 1 ----GUUCGCCGCUCAAAUUGACAGCUGAAUAAAAUGUUAUUAUAUUUACACCAUAAUUUGCAUGGCAAUUAAUCAAAUGGCAUGCGAAAUUCUGUCGCUUCGACGGG-G---------- ----...(.(((.((.((.((((((.......((((((....)))))).........((((((((.((.((....)).)).))))))))...)))))).)).))))).-)---------- ( -24.50) >DroAna_CAF1 179095 97 + 1 GGUUCUCUGCCGCA-AAAUUGACAGCUGAAUAAAAUGUUAUUAUAUUUACACCAUAAUUUGCAUGGCAAUUAAUCAAAUGGCAUGCAGAAUUCGACA------------A---------- (((.....)))...-.........(.(((((.((((((....)))))).........((((((((.((.((....)).)).))))))))))))).).------------.---------- ( -17.60) >consensus ____CUCUGCCGCA_AAAUUGACAGCUGAAUAAAAUGUUAUUAUAUUUACACCAUAAUUUGCAUGGCAAUUAAUCAAAUGGCAUGCAAAAUUCGACAACAUCGACGGC_A__________ ...........................((((.((((((....)))))).........((((((((.((.((....)).)).))))))))))))........................... (-14.29 = -14.02 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:46 2006