Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,437,581 – 6,437,676 |
Length | 95 |
Max. P | 0.500000 |
Location | 6,437,581 – 6,437,676 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 86.79 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -18.84 |
Energy contribution | -18.88 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.15 |
Mean z-score | -1.49 |
Structure conservation index | 0.76 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6437581 95 + 23771897 GUACCUGCGGCAGCCUUUGGCGAAUAUUUUAUAUUUUU-------UCCUUACCCAUUUUUAU--UUUUUUGCGAAGGGAUUAAGCUCGCUCUGGGAAGAGCCGC- ......(((((..(((..(((((..........((..(-------(((((.(.((.......--.....)).)))))))..))..)))))..)))....)))))- ( -22.50) >DroSec_CAF1 175460 97 + 1 GUACCUGCGGCAGCCUUUGGCGAAUAUUUUAUAUUUUU-------UCCUUACUCAUUUUUUUUUUUUUUUUCGAAGGGAUUAAGCCCGCCAAGGGAAGAGCCGC- ......(((((..((((((((((((((...))))))..-------..............................(((......)))))))))))....)))))- ( -27.50) >DroSim_CAF1 181326 96 + 1 GUACCUGCGGCAGCCUUUGGCGAAUAUUUUAUAUUUUU-------UCCUUACCCAUUUUUUUU-UUUUUUGCGAUGGGAUUAAGCCCGCUCUGGGAAGAGCCGC- ......(((((.(((...)))..............(((-------((((..((((((......-........))))))....((....))..))))))))))))- ( -23.74) >DroEre_CAF1 180628 90 + 1 GUACCUGCGGCAGCCUUUGGCAAAUAUUUUAUAUUUUU-------UCCUUACCCGUUU--------UUUGGCGAAGGGAUUAAGCCCGCUCUGGGAAGAGCCGCA ......(((((.(((...)))..............(((-------((((....((((.--------...))))..(((......))).....)))))))))))). ( -27.10) >DroYak_CAF1 190250 98 + 1 GUACCUGCGGCAGCCUUUGGCAAAUAUUUUAUAUUUUUUACCCAUUCCUUGCCCAUUUUUU---UUUUUGGCGAAGGGAUUAAGCCCGCUCUGGGAAGAGC---- ......(.(((.(((...)))......................((((((((((........---.....))).)))))))...))))(((((....)))))---- ( -23.32) >consensus GUACCUGCGGCAGCCUUUGGCGAAUAUUUUAUAUUUUU_______UCCUUACCCAUUUUUUU__UUUUUUGCGAAGGGAUUAAGCCCGCUCUGGGAAGAGCCGC_ ......(((((..(((..(((((((((...)))))).......................................(((......))))))..)))....))))). (-18.84 = -18.88 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:45 2006