| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,418,511 – 6,418,605 |
| Length | 94 |
| Max. P | 0.784024 |
| Location | 6,418,511 – 6,418,605 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 89.68 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -20.19 |
| Energy contribution | -20.50 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784024 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6418511 94 + 23771897 GAAGUCGGUCGGCCAGGCAGGUGAUAUGGGGCCCG-ACCAUGGGAAAGGAAUGAAACUGCCAUGAGAUUGGUUUUUAAAUCAGAUUUUUGGGAGA ......((((((((...((.......)).)).)))-))).................((.(((.(((.((((((....)))))).))).))).)). ( -24.00) >DroSec_CAF1 156493 94 + 1 GAAGUCGGUCGGCAUGGCAGGUGAUAUGGGGCCCG-ACCAUGGGAAAGGAAAGAAACUGCCAUGAGAUGGGUUUUUAAAUCAGAUUUUUGGGAGA (((..(.(((..((((((((...........(((.-.....)))............)))))))).))).)..))).................... ( -25.10) >DroEre_CAF1 160794 89 + 1 GAAGUCG----GCCAGGCAGGUGAUAUGGGGCCCA-ACCAUGGGAAAGGAACGAAACUGCCAUGAGAUGGGUU-CAAAAUCAGAUUUUUGGGAGA ....((.----.(((((.(..((((...(((((((-.((((((...((........)).))))).).))))))-)...))))..).)))))..)) ( -26.90) >DroYak_CAF1 169752 90 + 1 GAAGUCG----ACCAGGCAGGUGAUAUGGGGCCCAGGCCAUGGGAAAGGAAUGAAACUGCCAUGAGAUGGGUU-CAAAAUCAGAUUUUUGGGCGA ....(((----.(((((.(..((((...(((((((...(((((...((........)).)))))...))))))-)...))))..).))))).))) ( -28.90) >consensus GAAGUCG____GCCAGGCAGGUGAUAUGGGGCCCA_ACCAUGGGAAAGGAAUGAAACUGCCAUGAGAUGGGUU_CAAAAUCAGAUUUUUGGGAGA ((((((.....(((.....)))(((..((((((((...(((((...((........)).)))))...))))))))...))).))))))....... (-20.19 = -20.50 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:35 2006