Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,417,549 – 6,417,646 |
Length | 97 |
Max. P | 0.998239 |
Location | 6,417,549 – 6,417,646 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 87.92 |
Mean single sequence MFE | -23.56 |
Consensus MFE | -20.94 |
Energy contribution | -21.14 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.49 |
Structure conservation index | 0.89 |
SVM decision value | 3.04 |
SVM RNA-class probability | 0.998239 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6417549 97 + 23771897 ----GUGGACUUGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUCCUUCUUUUC--GUUUUUUUCACGU ----((((((.((((.((((..((..(((.....)))..))...)))))))).))))))...(((.(((((.(((......))).)))--))......))).. ( -24.30) >DroSec_CAF1 155568 96 + 1 ----GUGGACUUGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUCCUUCUUUUC--GUUU-UUUCACGU ----((((((.((((.((((..((..(((.....)))..))...)))))))).))))))...(((.(((((.(((......))).)))--))..-...))).. ( -25.00) >DroEre_CAF1 159867 97 + 1 ----GUGGACUUGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUCCUUCUUUUC--GUUUUUUUCACGU ----((((((.((((.((((..((..(((.....)))..))...)))))))).))))))...(((.(((((.(((......))).)))--))......))).. ( -24.30) >DroYak_CAF1 168783 99 + 1 ----GUGGACUUGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUUCUUCUUUUCCCCUUUUUAUCACGU ----((((((.((((.((((..((..(((.....)))..))...)))))))).))))))...(((.(((((.((................)).)))))))).. ( -22.89) >DroAna_CAF1 159056 85 + 1 UUCCGUGGACCGGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUCCUGGCU------------------ ..(((.....)))(((((((..((..(((.....)))..))...))))(((((((.........))))).)).........))).------------------ ( -21.30) >consensus ____GUGGACUUGGCCGAAAGUGAUUGCAAUUUUUGCUCUCUUAUUUCGCCAUGUUUACUUUGUGCAUGAGCAGAUUUCCUUCUUUUC__GUUUUUUUCACGU ....((((((.((((.((((..((..(((.....)))..))...)))))))).))))))..(.(((....))).)............................ (-20.94 = -21.14 + 0.20)
Location | 6,417,549 – 6,417,646 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 87.92 |
Mean single sequence MFE | -18.06 |
Consensus MFE | -14.32 |
Energy contribution | -14.72 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.67 |
Structure conservation index | 0.79 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.743238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6417549 97 - 23771897 ACGUGAAAAAAAC--GAAAAGAAGGAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCAAGUCCAC---- .(((.......))--).......(((....(((....)))...........((((((((...((..(((.....)))..))..)))).))))..)))..---- ( -18.20) >DroSec_CAF1 155568 96 - 1 ACGUGAAA-AAAC--GAAAAGAAGGAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCAAGUCCAC---- .(((....-..))--).......(((....(((....)))...........((((((((...((..(((.....)))..))..)))).))))..)))..---- ( -18.70) >DroEre_CAF1 159867 97 - 1 ACGUGAAAAAAAC--GAAAAGAAGGAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCAAGUCCAC---- .(((.......))--).......(((....(((....)))...........((((((((...((..(((.....)))..))..)))).))))..)))..---- ( -18.20) >DroYak_CAF1 168783 99 - 1 ACGUGAUAAAAAGGGGAAAAGAAGAAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCAAGUCCAC---- ..(((........(((...(((......))).)))...)))...((..((.((((((((...((..(((.....)))..))..)))).)))).))..))---- ( -16.80) >DroAna_CAF1 159056 85 - 1 ------------------AGCCAGGAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCCGGUCCACGGAA ------------------.(((.........((.((((...........))))))((((...((..(((.....)))..))..)))))))(((.....))).. ( -18.40) >consensus ACGUGAAAAAAAC__GAAAAGAAGGAAAUCUGCUCAUGCACAAAGUAAACAUGGCGAAAUAAGAGAGCAAAAAUUGCAAUCACUUUCGGCCAAGUCCAC____ .......................(((....(((....)))...........((((((((...((..(((.....)))..))..)))).))))..)))...... (-14.32 = -14.72 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:35 2006