Locus 2280

Sequence ID 3L_DroMel_CAF1
Location 6,413,754 – 6,413,853
Length 99
Max. P 0.571421
window3524

overview

Window 4

Location 6,413,754 – 6,413,853
Length 99
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 82.97
Mean single sequence MFE -33.30
Consensus MFE -21.46
Energy contribution -23.10
Covariance contribution 1.64
Combinations/Pair 1.13
Mean z-score -1.77
Structure conservation index 0.64
SVM decision value 0.08
SVM RNA-class probability 0.571421
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6413754 99 - 23771897
GCGGAGCGGUUAUGUGGCGGAAUCCGGGGGAAUCAUGGAUUC--GUUGACUAGG--GGAUCUCAGAUCGGG-------GAUCGGGGAUCUGA-----GCUGAACUGAACUGAGAA
.(((..(((((....(((.(((((((((....)).)))))))--..........--(((((((.((((...-------)))).)))))))..-----))).)))))..))).... ( -30.80)
>DroSec_CAF1 151702 101 - 1
GCAGAGCGGUUAUGUGGCGGAAUCCGGGGGAAUCAUGGAUUC--GGUGACUAGGAGGGAUCUCAGAUCGGG-------GAUCGGGGAUCUGA-----GCUGAACUGAACUGAGAA
.(((..(((((..((.((.(((((((((....)).)))))))--.)).))(((...(((((((.((((...-------)))).)))))))..-----.))))))))..))).... ( -34.50)
>DroSim_CAF1 157891 108 - 1
GCAGAGCGGUUAUGUGGCGGAAUCCGGGGGAAUCAUGGAUUC--GGCGACUAGGGGGGAUCUCAGAUCGGGGAUUGGGGAUCGGGGAUCUGA-----GCUGAACUGAACUGAGAA
.(((..(((((..((.((.(((((((((....)).)))))))--.)).))(((...(((((((.((((..........)))).)))))))..-----.))))))))..))).... ( -36.80)
>DroEre_CAF1 156017 96 - 1
GCAGAGCGGCUAUGUGGCCGAAUCCGGGGGAUUCAUGGA----------UUGGG--GGAUCUCAGAUCGGG-------GAUCGGGGAUGGGAGCUGAACUGAACUGAACUGAGAA
.(((...((((....))))((((((...)))))).....----------)))..--...((((((.((((.-------..((((....(....)....)))).)))).)))))). ( -29.20)
>DroYak_CAF1 164812 103 - 1
GCAGAGCGGUUAUGUGGCCGAAUCCGGGGGAUUCAUGGACUCUUGGUGACUAGG--GGAUCUCGGAUCGGC-------GAACGGGGAUCGGAGAU---CAGAGCUGAACUGAGAA
.(((..(((((........((((((...)))))).....((((.(....).)))--)((((((.((((..(-------....)..)))).)))))---)..)))))..))).... ( -35.20)
>consensus
GCAGAGCGGUUAUGUGGCGGAAUCCGGGGGAAUCAUGGAUUC__GGUGACUAGG__GGAUCUCAGAUCGGG_______GAUCGGGGAUCUGA_____GCUGAACUGAACUGAGAA
.(((..(((((..((.((.(((((((((....)).)))))))...)).)).......((((((.((((..........)))).))))))............)))))..))).... (-21.46 = -23.10 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:33 2006