Locus 228

Sequence ID 3L_DroMel_CAF1
Location 626,405 – 626,514
Length 109
Max. P 0.957363
window338

overview

Window 8

Location 626,405 – 626,514
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.11
Mean single sequence MFE -29.22
Consensus MFE -26.45
Energy contribution -26.26
Covariance contribution -0.19
Combinations/Pair 1.21
Mean z-score -1.87
Structure conservation index 0.91
SVM decision value 1.48
SVM RNA-class probability 0.957363
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 626405 109 + 23771897
U-----GAGAAGGCCUGCUUGGGUAAACAGCAUUCCAAGCAUA-----CCAGCGGCGACCGAAUCUAAACAACUUGAUGUUGGUAUU-UUAUGCUUUGUUUGCCCAUUACAAAAGCCCUU
.-----.....(((.((..((((((((((((((...(((.(((-----((((((.(((...............))).))))))))))-))))))..))))))))))...))...)))... ( -29.86)
>DroSec_CAF1 37897 109 + 1
U-----GAGAAGGCCUGCUUGGGUAAACAGCAUUCCAAGCAUA-----CCAGCGGCGACCGAAUCUAAACAACUUGAUGUUGGUAUU-UUAUGCUUUGUUUGCCCAUUACAAAAGCCCUU
.-----.....(((.((..((((((((((((((...(((.(((-----((((((.(((...............))).))))))))))-))))))..))))))))))...))...)))... ( -29.86)
>DroSim_CAF1 36160 109 + 1
U-----GAGAAGGCCUGCUUGGGUAAACAGCAUUCCAAGCAUA-----CCAGCGGCGACCGAAUCUAAACAACUUGAUGUUGGUAUU-UUAUGCUUUGUUUGCCCAUUACAAAAGCCCUU
.-----.....(((.((..((((((((((((((...(((.(((-----((((((.(((...............))).))))))))))-))))))..))))))))))...))...)))... ( -29.86)
>DroEre_CAF1 40013 107 + 1
U-----G--AAGGCCCGCUUGGGUAAACAGCAUUCCAAGCAUG-----CCAGAGGCGACCGAAUCUAAACAACUUGAUGUUGGUAUU-UUAUGCUUUGUUUGCCCAUUACAAAAGCCCUU
.-----.--..(((.....((((((((((.......(((((((-----((...))).((((((((..........))).)))))...-..))))))))))))))))........)))... ( -29.13)
>DroYak_CAF1 42200 107 + 1
U-----G--AAGGCCCGCUUGGGUAAACAGCAUUCCAGGCAUG-----CCAGCGGCAAGCGAAUCUAAACAACUUGAUGUUGGUAUU-UUAUGCUUUGUUUGCCCAUUACAAAAGCCCUU
.-----.--..(((.....((((((((((((((.......(((-----((((((.((((.............)))).))))))))).-..))))..))))))))))........)))... ( -32.64)
>DroAna_CAF1 47576 120 + 1
CCUCUCCCCAUCCCCCGCCUGGGCAAACAGCAUUCCAAGCAUUCCAUUCCAACGACGACCGAAUCUAAACAACUUGAUGUUGGUAUUUUUAUGCUUUGUUUGUCCAUUACAAAAGCCCUU
...................((((((((((.......((((((......((((((.(((...............))).)))))).......)))))))))))))))).............. ( -23.99)
>consensus
U_____GAGAAGGCCCGCUUGGGUAAACAGCAUUCCAAGCAUA_____CCAGCGGCGACCGAAUCUAAACAACUUGAUGUUGGUAUU_UUAUGCUUUGUUUGCCCAUUACAAAAGCCCUU
...........(((.....((((((((((.......(((((((.....((((((.(((...............))).))))))......)))))))))))))))))........)))... (-26.45 = -26.26 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:51 2006