Locus 2279

Sequence ID 3L_DroMel_CAF1
Location 6,411,008 – 6,411,098
Length 90
Max. P 0.500000
window3523

overview

Window 3

Location 6,411,008 – 6,411,098
Length 90
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 75.30
Mean single sequence MFE -21.60
Consensus MFE -14.50
Energy contribution -15.42
Covariance contribution 0.92
Combinations/Pair 1.06
Mean z-score -0.99
Structure conservation index 0.67
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6411008 90 + 23771897
AAUCCAUUUCAAUUGCCGCGUC----------GCGUUUAAGAUUACGCAACCGAUUAGCCAGGCAGCUGGAAAAUGCGGCCCAUGGAGAGCAAAAAG-----UAU---
..(((((.......(((((((.----------((((........))))..........((((....))))...)))))))..)))))..........-----...--- ( -24.30)
>DroVir_CAF1 204687 69 + 1
AAUCCAUUUCAAUUGCCACGAC----------GCGUUUAAGAUUACGCAACCGAUUAGCCAGGCAGCUGGAAAAUGCCG-----------------------------
......(((((.(((((.....----------((((........))))....(......).))))).))))).......----------------------------- ( -14.70)
>DroPse_CAF1 191260 92 + 1
AAUCCAUUUCAAUUGCCGCUUGGCGUUGCUUGGCGUUUAAGAUUACGCAACCGAUUAGCCAGGCAGCUGGAAAAUGCGGCCC-CAAAGAGCGA---------------
..............((((((((((((((....((((........))))...))))..))))))).((........)))))..-..........--------------- ( -25.90)
>DroGri_CAF1 152999 69 + 1
AAUCCAUUUCAAUUGCCACGAC----------GCGUUUAAGAUUACGCAAGCGAUUAGCCAGGCAGCUGGAAAAUGCCG-----------------------------
......(((((.(((((.....----------((((........))))..((.....))..))))).))))).......----------------------------- ( -17.60)
>DroEre_CAF1 153294 98 + 1
AAUCCAUUUCAAUUGCCGCGUC----------GCGUUUAAGAUUACGCAACCGAUUAGCCAGGCAGCUGGAAAAUGCGGCCCACGGAGAGCAAAAUAAAAAAUAAAGA
......((((....(((((((.----------((((........))))..........((((....))))...))))))).....))))................... ( -23.50)
>DroAna_CAF1 152557 88 + 1
AAUCCAUUUCAAUUGCCGCUCC----------GCGUUUAAGAUUACGCAACCGAUUAGCCAGGCAGCUGGAAAAUGUGGCCCAAAGAGAGGAGGC-------UCU---
..(((.((((....(((((...----------((((........)))).....(((..((((....))))..)))))))).....)))))))...-------...--- ( -23.60)
>consensus
AAUCCAUUUCAAUUGCCGCGUC__________GCGUUUAAGAUUACGCAACCGAUUAGCCAGGCAGCUGGAAAAUGCGGCCC___GAGAGCAA_______________
..............(((((.............((((........)))).....(((..((((....))))..))))))))............................ (-14.50 = -15.42 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:32 2006