Locus 2277

Sequence ID 3L_DroMel_CAF1
Location 6,372,489 – 6,372,593
Length 104
Max. P 0.512180
window3520

overview

Window 0

Location 6,372,489 – 6,372,593
Length 104
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 83.37
Mean single sequence MFE -23.02
Consensus MFE -15.58
Energy contribution -15.58
Covariance contribution 0.00
Combinations/Pair 1.24
Mean z-score -1.62
Structure conservation index 0.68
SVM decision value -0.04
SVM RNA-class probability 0.512180
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6372489 104 - 23771897
AACUGAAUUACACAAGAUACAUUAUGUAUUUUGUUAGCUAUGUGGUGAACGGGAAUUCU-AAAUUUAUGACAGUGCUUUGGGCCAUAACUGAAAAU-UCAGUAUUU
.((((((((..(((((((((.....)))))))))..((..(((.(((((..((....))-...))))).)))..))((..(.......)..)))))-))))).... ( -25.10)
>DroSec_CAF1 136812 105 - 1
AACUGAAUUACACAAGAUACAUUAUGUAUUUUGUUGGCCAUGUGGUGAACGGGAAUUUU-AAUUUUAUGACAUUGCUUUGGGCUAUAACUGAAAAUUUCAGUAUUU
.((((((....(((((((((.....)))))))))(((((..(..(((....(((((...-.)))))....)))..)....)))))...........)))))).... ( -26.60)
>DroSim_CAF1 143551 105 - 1
AACUGAAUUACACAAGAUACAUUAUGUAUUUUGUUAGCCAUGUGGUGAACGGGAAUUUU-AAUUUUAUGACAUUGCUUUGGGCUAUAACUGUUAAUUUCAGUAUUU
.((((((..(((((((((((.....)))))))))(((((..(..(((....(((((...-.)))))....)))..)....))))).....))....)))))).... ( -27.50)
>DroEre_CAF1 141320 93 - 1
AACCGAAUUACAAAAGAUACAUUAUGUAUUUUG-CAGCCCUGUGGUGAGCGGGAAUUCU-UUUUUUAUGGCAGUGCUUUGGGCAUCAAUUGAAA-----------U
..(((((......(((((((.....))))))).-..((.((((.(((((.(((....))-)..))))).)))).))))))).............-----------. ( -19.50)
>DroYak_CAF1 149487 105 - 1
AACCAAAUUACAAAAGAUACAUUAUGUACUUUGUUAGCUCUGUGGCGAACGGGAAUUCAAAUUUUUAUGACAGUGCUUUGGGCAUCAAUUGAAAAUUU-UGUAUUU
..((........((((.(((.....)))))))(((.(((....))).)))))((((.((((((((((.....((((.....))))....)))))).))-)).)))) ( -16.40)
>consensus
AACUGAAUUACACAAGAUACAUUAUGUAUUUUGUUAGCCAUGUGGUGAACGGGAAUUCU_AAUUUUAUGACAGUGCUUUGGGCAAUAACUGAAAAUUUCAGUAUUU
..((((.....(((((((((.....))))))))).(((.((((.(((((..............))))).)))).)))))))......................... (-15.58 = -15.58 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:29 2006