Locus 2271

Sequence ID 3L_DroMel_CAF1
Location 6,345,226 – 6,345,345
Length 119
Max. P 0.610484
window3508

overview

Window 8

Location 6,345,226 – 6,345,345
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 99.44
Mean single sequence MFE -27.50
Consensus MFE -27.50
Energy contribution -27.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -0.65
Structure conservation index 1.00
SVM decision value 0.16
SVM RNA-class probability 0.610484
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6345226 119 - 23771897
AUAUCGGCAUUUUAUUAGCGCGUGCAUCCCAUUUGCCGCUUUUCAUUGCGAUU-UUAAAAGUGUUCCCGUGUUUUGAUAGCCGCACUAUCAGUGACCCAUGGAAAUAAAUGUGGCCUAUA
.....(((..(((((((((((..(((.......)))(((........)))...-......))))).(((((..(((((((.....))))))).....))))).))))))....))).... ( -27.50)
>DroGri_CAF1 113096 119 - 1
AUAUCGGCAUUUUAUUAGCGCGUGCAUCCCAUUUGCCGCUUUUCAUUGCGAUU-UUAAAAGUGUUCCCGUGUUUUGAUAGCCGCACUAUCAGUGACCCAUGGAAAUAAAUGUGGCCUAUA
.....(((..(((((((((((..(((.......)))(((........)))...-......))))).(((((..(((((((.....))))))).....))))).))))))....))).... ( -27.50)
>DroSec_CAF1 110010 119 - 1
AUAUCGGCAUUUUAUUAGCGCGUGCAUCCCAUUUGCCGCUUUUCAUUGCGAUU-UUAAAAGUGUUCCCGUGUUUUGAUAGCCGCACUAUCAGUGACCCAUGGAAAUAAAUGUGGCCUAUA
.....(((..(((((((((((..(((.......)))(((........)))...-......))))).(((((..(((((((.....))))))).....))))).))))))....))).... ( -27.50)
>DroSim_CAF1 115940 119 - 1
AUAUCGGCAUUUUAUUAGCGCGUGCAUCCCAUUUGCCGCUUUUCAUUGCGAUU-UUAAAAGUGUUCCCGUGUUUUGAUAGCCGCACUAUCAGUGACCCAUGGAAAUAAAUGUGGCCUAUA
.....(((..(((((((((((..(((.......)))(((........)))...-......))))).(((((..(((((((.....))))))).....))))).))))))....))).... ( -27.50)
>DroEre_CAF1 113029 119 - 1
AUAUCGGCAUUUUAUUAGCGCGUGCAUCCCAUUUGCCGCUUUUCAUUGCGAUU-UUAAAAGUGUUCCCGUGUUUUGAUAGCCGCACUAUCAGUGACCCAUGGAAAUAAAUGUGGCCUAUA
.....(((..(((((((((((..(((.......)))(((........)))...-......))))).(((((..(((((((.....))))))).....))))).))))))....))).... ( -27.50)
>DroWil_CAF1 132601 120 - 1
AUAUCGGCAUUUUAUUAGCGCGUGCAUCCCAUUUGCCGCUUUUCAUUGCGAUUUUUAAAAGUGUUCCCGUGUUUUGAUAGCCACACUAUCAGUGACCCAUGGAAAUAAAUGUGGCCUAUA
.....(((..(((((((((((..(((.......)))(((........)))..........))))).(((((..(((((((.....))))))).....))))).))))))....))).... ( -27.50)
>consensus
AUAUCGGCAUUUUAUUAGCGCGUGCAUCCCAUUUGCCGCUUUUCAUUGCGAUU_UUAAAAGUGUUCCCGUGUUUUGAUAGCCGCACUAUCAGUGACCCAUGGAAAUAAAUGUGGCCUAUA
.....(((..(((((((((((..(((.......)))(((........)))..........))))).(((((..(((((((.....))))))).....))))).))))))....))).... (-27.50 = -27.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:18 2006