| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,336,336 – 6,336,438 |
| Length | 102 |
| Max. P | 0.550027 |
| Location | 6,336,336 – 6,336,438 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 80.42 |
| Mean single sequence MFE | -15.10 |
| Consensus MFE | -11.12 |
| Energy contribution | -10.90 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.550027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6336336 102 - 23771897 AAUAGUUAGGAGUUAAAAAAUGAAUGCUUUAAAAAAAAAAACGUAUGCAUUCUUGUCCGGAAGCAAGGAAUAAAUAUAUCCAAAAUCAACUGAUUUAUAGCU ...((((((((..........((((((...................))))))...(((........))).........))).(((((....))))).))))) ( -16.51) >DroSec_CAF1 101320 82 - 1 AAUAGU-AUGAGUUAAAAAAUGU-------------------GUGUGCAUUCUUGUACAGAAGCAAGGAACGAAUAUAUCCAAAAUCAACUGAUUUAUAGCU .....(-((((((((.....(((-------------------.((((((....))))))...))).(((.........))).........)))))))))... ( -14.40) >DroSim_CAF1 107181 82 - 1 UAUAGU-AUGAGUUAAAAAAUGU-------------------GUGUGCAUUCUUGUACAGAAGCAAGGAAUAAAUAUAUCCAAAAUCAACUGAUUUAUAGCU .....(-((((((((.....(((-------------------.((((((....))))))...))).(((.........))).........)))))))))... ( -14.40) >consensus AAUAGU_AUGAGUUAAAAAAUGU___________________GUGUGCAUUCUUGUACAGAAGCAAGGAAUAAAUAUAUCCAAAAUCAACUGAUUUAUAGCU ..........(((((...........................((((...(((((((......)))))))....)))).....(((((....))))).))))) (-11.12 = -10.90 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:17 2006