Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 625,730 – 625,830 |
Length | 100 |
Max. P | 0.998807 |
Location | 625,730 – 625,830 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.23 |
Mean single sequence MFE | -27.40 |
Consensus MFE | -26.05 |
Energy contribution | -26.05 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.86 |
Structure conservation index | 0.95 |
SVM decision value | 3.23 |
SVM RNA-class probability | 0.998807 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 625730 100 + 23771897 --------------------ACUCCAAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC --------------------...........(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))))).......... ( -26.10) >DroVir_CAF1 56211 114 + 1 -UCUUUGUGUGUCGUCUA--UCU---CUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUAUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC -....((.((((((((.(--((.---..)))..))).((((((.((((((((((..((((((.(((((((...)))).))).))))))..)))))))))).))))))....).)))))). ( -30.60) >DroEre_CAF1 39281 100 + 1 --------------------ACUCCAAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC --------------------...........(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))))).......... ( -26.10) >DroWil_CAF1 49302 120 + 1 UUGUUUUUUUUUCAUACAUUUUUUUGAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC ..........(((((.((((.....))))...((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).)))))))))))))...... ( -29.40) >DroYak_CAF1 41472 100 + 1 --------------------ACUCCAAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC --------------------...........(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))))).......... ( -26.10) >DroAna_CAF1 46121 100 + 1 --------------------ACUCCAAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUUAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC --------------------...........(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))))).......... ( -26.10) >consensus ____________________ACUCCAAUGAUUUGACUACGAAACCGGUUUUCGAUUUGGUUUGACUGUUUUUCAUACAAGUGAGAUCAUUUUGAAAGCUGAUUUUGUCAAUGAAUACCAC ...............................(((((...((((.((((((((((..((((((.(((((.......)).))).))))))..)))))))))).))))))))).......... (-26.05 = -26.05 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:50 2006