Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,335,273 – 6,335,376 |
Length | 103 |
Max. P | 0.539937 |
Location | 6,335,273 – 6,335,376 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.56 |
Mean single sequence MFE | -22.40 |
Consensus MFE | -14.61 |
Energy contribution | -14.25 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -1.38 |
Structure conservation index | 0.65 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539937 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6335273 103 - 23771897 -----AGUUGCA------GUUGCAGUUUACAUG-GUAAAUUGUGCAACUUGUUCACUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAGU-----CUCGGCACAAAGGAA -----((((((.------...(((((((((...-)))))))))))))))..(((.((((.(((......(((((.((((...........)))).)))))-----....))).))))))) ( -23.90) >DroVir_CAF1 113379 107 - 1 ACUGGCACUGAA------GUCGGACUUUACAAGAGUAAAUUGUGCAACUUGUUCGCUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAAU-----CU--GGACAAAAGAA .(((((......------)))))..(((((....)))))((((((((...(....)...))))))))...(((((((..((...(((((....))))).)-----))--))))))..... ( -23.20) >DroGri_CAF1 103241 102 - 1 -----GACUGAA------GUUGGACUUUACAAGAGUAAAUUGUGCAACUUGUUCGCUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUAUGCAAU-----CU--GCACAAAAGAA -----.....((------((((.(((((((....)))))..)).))))))....((...(((((((....((((.(((.....))).)))).))))))).-----..--))......... ( -20.30) >DroEre_CAF1 101796 109 - 1 -----AGUUGCAGUUGCAGUUGCAGUUUACAUG-GUAAAUUGUGCAACUUGUUCACUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAGU-----CUCGGCACAAAGGAA -----....((((((((....(((((((((...-)))))))))))))).)))((.((((.(((......(((((.((((...........)))).)))))-----....))).)))))). ( -24.80) >DroWil_CAF1 121287 96 - 1 -----------------------GAUUUGCCGA-GUAAAUUGUGCAACUUGUUCACUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAGCAAACAAUCUGCACAAAGGAA -----------------------......((..-.....(((((((.....((((......(((.......)))....))))..))))))).(((((((........)))))))..)).. ( -19.90) >DroMoj_CAF1 110216 107 - 1 ACGGCUACUCAA------GUCCGACUUUACAAGAGUAAAUUGUGCAACUUGUUCGCUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAAU-----CU--GCACAAAGGAA .(((((.....)------).)))..(((((....)))))(((((((..((((.((.(((.(((((...(((.....)))....))))).))))).)))).-----.)--))))))..... ( -22.30) >consensus _____AACUGAA______GUUGGACUUUACAAG_GUAAAUUGUGCAACUUGUUCACUUUUUGCAUAAAAAUUGUUCAUUGAAAAUGCAUAAAUGUGCAAU_____CU__GCACAAAGGAA .........................(((((....)))))((((((....((..((.(((((....))))).))..)).......(((((....)))))...........))))))..... (-14.61 = -14.25 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:16 2006