| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,332,514 – 6,332,618 |
| Length | 104 |
| Max. P | 0.547907 |
| Location | 6,332,514 – 6,332,618 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 72.67 |
| Mean single sequence MFE | -21.25 |
| Consensus MFE | -11.89 |
| Energy contribution | -11.78 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6332514 104 - 23771897 UUGAAGAAUUAAGAUCCAUCCCUUCUUAACUCCCAUCUUCGCCACCUCUGUACGAUUGCUGUUGGUGCAAUGAAAAUGCUUUAGCAGCAAUUAAUCGACAGCUC ..(((((.((((((.........))))))......))))).......((((.(((((((((((((.(((.(....)))).)))))))))....))))))))... ( -25.80) >DroSec_CAF1 97520 104 - 1 UUGAAGAUUUAAGACCAAUCCCUUCUUAACUCUUAUCUUCGCCACCUCUCAAAGAUUGCUGUUGGUGCAAUGAAAAUGCUUCAGCUGCAAUUAAUCGACAGCUC ..((((((((((((.........)))))).....)))))).................((((((((((((.((((.....))))..)))).....)))))))).. ( -23.00) >DroSim_CAF1 103400 91 - 1 UUGA-------------AUCCCUUCUUAACUCCCAUCUUCGCCACUUCUGAACGAUUGCUGUUGGUGCAAUGAAAAUGCUUCAGCUGCAAUUAAUCGACAGCUC ....-------------.................(((((((.......)))).))).((((((((((((.((((.....))))..)))).....)))))))).. ( -16.70) >DroEre_CAF1 98906 96 - 1 --------UGUAAUCCAACCCCUUCCCAAUUUCCAUGCUCGCCUCCUCUGUGCGAUGGCUGCUGGUGCAAUGAAAAUGCUUCAGCAGCAAUUAAUCGGCAGCUC --------...........................((((((((......).))))..((((((((.(((.(....)))).)))))))).........))).... ( -24.60) >DroYak_CAF1 106981 104 - 1 ACGAAGAUUGUAGUUCAACCCCUUCUCAACUUCCACCUCCGCCUCCUCUGUGCGAUUGCCGUUGGUGCAAUGAAAAUGCUUCGGCAGCAAUUAAUCGGCAACUU ..((((.(((.((...........)))))))))......((((......).))).(((((((((((((.((....))((....)).)).))))).))))))... ( -23.60) >DroAna_CAF1 97784 94 - 1 --------UAUAGUUUCA--CCUUGGAAACUUCUCCUUUCCCCGCCACUGUUUAUUACCAGUUGAUGUAAUGAAAAUACCUCUGCAGCAAUUAAUCGACAGCUA --------...((((((.--.....))))))................(((((.((((...((((.((((..(.......)..)))).)))))))).)))))... ( -13.80) >consensus UUGA____UGUAGUUCAAUCCCUUCUUAACUCCCAUCUUCGCCACCUCUGUACGAUUGCUGUUGGUGCAAUGAAAAUGCUUCAGCAGCAAUUAAUCGACAGCUC .....................................................((((((.(((((.(((.(....)))).))))).))))))............ (-11.89 = -11.78 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:15 2006