Locus 2265

Sequence ID 3L_DroMel_CAF1
Location 6,318,728 – 6,318,832
Length 104
Max. P 0.542276
window3501

overview

Window 1

Location 6,318,728 – 6,318,832
Length 104
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 90.63
Mean single sequence MFE -40.12
Consensus MFE -31.34
Energy contribution -32.53
Covariance contribution 1.19
Combinations/Pair 1.09
Mean z-score -1.50
Structure conservation index 0.78
SVM decision value 0.02
SVM RNA-class probability 0.542276
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6318728 104 - 23771897
CAGGUGAGUGGCAGCAGAGGUGGAGUUUCAGGGGGUUAAAGGGGGGCUUCUCAGAGGCCAUCA---------GGGGGUUUCCGGGGACUCCAGGGGACAGGGUGUGGCUGGCU
..(((.(((.(((.(.....((((((..(.(((..((....(..((((((...))))))..).---------...))..))).)..))))))(....)..).))).))).))) ( -42.20)
>DroSec_CAF1 83813 104 - 1
CAGGUGAAUGGCAGCAGAGGUGAAGUUUCAGGGGGCUAAAGGGGGACUUCUCAGAGGCCAUCA---------GGGGGUUUCCGGGGACUCCAGGGGACAGGGUGUGGCUGGCU
.........(.((((........(((..(.((..(((....((((.((((...)))))).)).---------...)))..)).)..)))((.(....).)).....)))).). ( -31.40)
>DroSim_CAF1 88958 104 - 1
CAGGUGAGUGGCAGCAGAGGUGAAGUUUCAGGGGGCUAAAGGGGGGCUUCUCAGAGGCCAUCA---------GGGGGUUUCCGGGGACUCCAGGGGACAGGGUGUGGCUGGCU
..(((.(((.(((.(...((...(((..(.((..(((....(..((((((...))))))..).---------...)))..)).)..))))).(....)..).))).))).))) ( -40.40)
>DroEre_CAF1 85536 112 - 1
CAGGUGAGUGGCAGCAGAGGCGGAGUUCCAGGG-GCUUAAGGGGGGCAUCUCAGGGGCCAUCAUGGGUUUCCGGGGGUUUCCGGGGACGCCAGGGGACAGGGUGUGGCUGGCU
..(((.(((.(((.(...(((......(((..(-((((..((((....))))..)))))....)))((..(((((....)))))..))))).(....)..).))).))).))) ( -46.50)
>consensus
CAGGUGAGUGGCAGCAGAGGUGAAGUUUCAGGGGGCUAAAGGGGGGCUUCUCAGAGGCCAUCA_________GGGGGUUUCCGGGGACUCCAGGGGACAGGGUGUGGCUGGCU
..(((.(((.(((.(......((((((((.(((((((....(..((((((...))))))..).............))))))).)))))))).(....)..).))).))).))) (-31.34 = -32.53 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:11 2006