Locus 2262

Sequence ID 3L_DroMel_CAF1
Location 6,297,124 – 6,297,216
Length 92
Max. P 0.994099
window3496

overview

Window 6

Location 6,297,124 – 6,297,216
Length 92
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 75.15
Mean single sequence MFE -34.32
Consensus MFE -17.41
Energy contribution -17.72
Covariance contribution 0.31
Combinations/Pair 1.12
Mean z-score -2.80
Structure conservation index 0.51
SVM decision value 2.45
SVM RNA-class probability 0.994099
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6297124 92 - 23771897
CU--CCAUCGAUGCAGUCGGUCCUGUGUAGCCAUAAUGAUGAAUUAGGCUGCUGUCAUGUCAUGACAAAGGC--GCU------GCAUGCAAUUUAGAUGGAA--------
.(--(((((..((((..(((((((..((((((.((((.....))))))))))((((((...)))))).))).--)))------)..)))).....)))))).-------- ( -34.30)
>DroVir_CAF1 76339 104 - 1
CU--CCAA--AGCCAGCCAGCGCCGUGUAGCCAUAAUGAUGAAUUAGGCUGCUGUCAUGUCAUGACAAAGGC--GCUGCAUCUGCAUGCGAUGCGGUUGAAGUGCCAGAG
((--(...--.(((((((((((((..((((((.((((.....))))))))))((((((...))))))..)))--)))(((((.......))))))))))..))....))) ( -41.80)
>DroPse_CAF1 88810 91 - 1
-----CGUCGUCGUCUUUGGGGCUGUGUAGCCAUAAUGAUGAAUUAGGCUGCUGUCAUGUCAUGACAAAGGCGCGCU------GCAUGCAAUUUAGAUGGCC--------
-----.(((((((((((((.(((((.((((((.((((.....))))))))))...)).)))....)))))))..((.------....))......)))))).-------- ( -33.10)
>DroWil_CAF1 80434 86 - 1
CU--CCUCCUCUGAGG--AGGCUUGUGUAGCCAUAAUGAUGAAUUAGGCUGCUGUCAUGUCAUGACAAAGGCGCACG------GCAUGCAAU------GGCA--------
((--((((....))))--))(((..(((((((.((((.....)))).(((..((((((...))))))..)))....)------)).))))..------))).-------- ( -30.50)
>DroAna_CAF1 64817 94 - 1
UUUGCCAUCGAUGCAGUCUGUCCUGUGCAGCCAUAAUGAUGAAUUAGGCUGCUGUCAUGUCAUGACAAAGGC--GCU------GCAUGCAAUUUAGAUGGAA--------
....(((((.(((((((..(.(((..((((((.((((.....))))))))))((((((...)))))).))))--)))------))))........)))))..-------- ( -33.10)
>DroPer_CAF1 92293 91 - 1
-----CGUCGUCGUCUUUGGGGCUGUGUAGCCAUAAUGAUGAAUUAGGCUGCUGUCAUGUCAUGACAAAGGCGCGCU------GCAUGCAAUUUAGAUGGCC--------
-----.(((((((((((((.(((((.((((((.((((.....))))))))))...)).)))....)))))))..((.------....))......)))))).-------- ( -33.10)
>consensus
CU__CCAUCGAUGCAGUCGGGCCUGUGUAGCCAUAAUGAUGAAUUAGGCUGCUGUCAUGUCAUGACAAAGGC__GCU______GCAUGCAAUUUAGAUGGAA________
.....((((.................((((((.((((.....))))))))))((((((...))))))...((..((.......))..))......))))........... (-17.41 = -17.72 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:06 2006