Locus 2261

Sequence ID 3L_DroMel_CAF1
Location 6,295,077 – 6,295,195
Length 118
Max. P 0.776811
window3495

overview

Window 5

Location 6,295,077 – 6,295,195
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.89
Mean single sequence MFE -34.37
Consensus MFE -14.06
Energy contribution -15.57
Covariance contribution 1.51
Combinations/Pair 1.39
Mean z-score -2.14
Structure conservation index 0.41
SVM decision value 0.55
SVM RNA-class probability 0.776811
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6295077 118 + 23771897
-UGGAGUAUAAAAGGCCCUGCAACAAAGGAAGUGCAAGAAACCAAGCGUUUGCAUU-UCCUAUUGUUUAUGGCCUUGAUCAUUACCUGGUUCAGCUUUCUCAUACUUUUUAUGCUGAUAA
-.(((((....((((((.((.(((((((((((((((((..........))))))))-)))).))))))).))))))....))).))....(((((.................)))))... ( -34.93)
>DroSec_CAF1 62016 118 + 1
-UGGAGUAUAAAAGGACCUGCAAGAAAGGAAGUGCACGAAACAAAGCGUUUGCAUU-UCCUAUUGUUUAUGGCCUUGGUCAUUACUUGGUUCAGCUUUCUUAUACUUUUUAUGCUGAUAA
-..(((((...((((.((.((((...((((((((((((........)))..)))))-)))).))))....))))))......)))))...(((((.................)))))... ( -31.53)
>DroSim_CAF1 64676 118 + 1
-UGGAGUAUAAAAGGACCGGCAAGAAAGGAAGUGCAAGAAACCAAGCGUUUGCAUU-UCCUAUUGUUUAUGGCCUUGGUCAUUACUUGGUUCAGCUUUCUUAUACUUUUUAUGCUGAUAA
-...(((((((((((((((((((...((((((((((((..........))))))))-)))).))))).(((((....))))).....)))))((....))......)))))))))..... ( -32.20)
>DroEre_CAF1 62480 118 + 1
-UGGAGUGUAAAAGGGCCUGGAAGCAGGGAAGUGCAGGAAACCAAGCGUUUGCACU-UCCUAUUGUUUAUGGCCUUGGUCGUUACUUGGUUUACCAUUCUAAUACUUUUCAUUCUGCUAA
-.((((((.(((((((((...(((((((((((((((((..........))))))))-))))..)))))..))))......((((..(((....)))...)))).)))))))))))..... ( -40.20)
>DroWil_CAF1 77965 116 + 1
GUGGAAUGU---AGGUCCCAAUUCUGAGGAAACGCAAUCACUCAGACGUUGGUACUAUCACAUAGAAACCGGUCUGAGU-GUUUGUUGGCAUAUUGGGCUGAUGUUUCUAAUGGCCUUAC
..(((((((---.((.((((((..((.(....)((((.(((((((((..((((.((((...))))..))))))))))))-).))))...)).)))))))).)))))))............ ( -36.10)
>DroYak_CAF1 66939 118 + 1
-UGGAGUGUGAAAGGUCCUGGAUGGAAGGAAGUGCAAGAGAACAAGCGUUUGCGUU-UCCUAUUGUUUAUGGCCGUGGUCAUUUCUUGGUUUACCUGUCUCAUCAUUUUUAUGCUGAUCA
-...(((((((((((((.((((..(.((((((((((((.(......).))))))))-)))).)..)))).))))(((((........((....))......))))))))))))))..... ( -31.24)
>consensus
_UGGAGUAUAAAAGGACCUGCAAGAAAGGAAGUGCAAGAAACCAAGCGUUUGCAUU_UCCUAUUGUUUAUGGCCUUGGUCAUUACUUGGUUCAGCUUUCUCAUACUUUUUAUGCUGAUAA
....(((((((((((...........((((((((((((..........)))))))).)))).......(((((....)))))......................)))))))))))..... (-14.06 = -15.57 +   1.51)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:05 2006