Locus 226

Sequence ID 3L_DroMel_CAF1
Location 625,556 – 625,646
Length 90
Max. P 0.804121
window336

overview

Window 6

Location 625,556 – 625,646
Length 90
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 96.61
Mean single sequence MFE -18.40
Consensus MFE -18.53
Energy contribution -18.58
Covariance contribution 0.06
Combinations/Pair 1.09
Mean z-score -0.73
Structure conservation index 1.01
SVM decision value 0.63
SVM RNA-class probability 0.804121
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 625556 90 + 23771897
UUAAAGUGUUAACUGGCAGCAUAUAAUUUCGGUCGACUUGACAUACAUUAUAAUUAUAGUUAUUA-AAUGUGAGCCAGGCACGUGCGUGAA
.....((((...(((((..............(((.....))).(((((((((((....)))))..-)))))).)))))))))......... ( -18.80)
>DroSec_CAF1 37059 90 + 1
UUAAAGUGUUAACUGGCAGCAUAUAAUUUCGGUCGACUUGACAUACAUUAUAAUUAUAGUUAUUA-AAUGUGAGCCAGGCACGUGCGUGAA
.....((((...(((((..............(((.....))).(((((((((((....)))))..-)))))).)))))))))......... ( -18.80)
>DroSim_CAF1 35319 90 + 1
UUAAAGUGUUAACUGGCAGCAUAUAAUUUCGGUCGACUUGACAUACAUUAUAAUUAUAGUUAUUA-AAUGUGAGCCAGGCACGUGCGUGAA
.....((((...(((((..............(((.....))).(((((((((((....)))))..-)))))).)))))))))......... ( -18.80)
>DroEre_CAF1 39102 90 + 1
UUAAAGUGUUAACUGGCAGCAUAUAAUUUCGGUCGACUUGACAUACAUUUUAAUUAUAGUUAUUA-AAUGUGAGCCAGGCACGUGCGUGAA
.....((((...(((((..............(((.....))).(((((((((((....))))..)-)))))).)))))))))......... ( -18.60)
>DroYak_CAF1 41267 90 + 1
UUAAAGUGUUAACUGGCAGCGUAUAAUUUCGGUCGACUUGACAUACAUUUUAAUUAUAGUUAUUA-AAUGUGAGCCAGGCACGUGCGUGAA
.....((((...(((((..............(((.....))).(((((((((((....))))..)-)))))).)))))))))......... ( -18.60)
>DroAna_CAF1 45951 91 + 1
UUAAAGUGUUAACUGGCAGCAUAUAAUUUCGGUCGUCUUGACACACAUAGUAAUUAUAGUUAUUAAAAUGUGAACCAGACACGUGCGUGAA
.....((((...((((...(((((.......(((.....))).....(((((((....)))))))..)))))..))))))))......... ( -16.80)
>consensus
UUAAAGUGUUAACUGGCAGCAUAUAAUUUCGGUCGACUUGACAUACAUUAUAAUUAUAGUUAUUA_AAUGUGAGCCAGGCACGUGCGUGAA
.....((((...(((((..............(((.....))).((((((.((((.......)))).)))))).)))))))))......... (-18.53 = -18.58 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:49 2006