| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,292,014 – 6,292,106 |
| Length | 92 |
| Max. P | 0.746928 |
| Location | 6,292,014 – 6,292,106 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 74.91 |
| Mean single sequence MFE | -31.32 |
| Consensus MFE | -16.38 |
| Energy contribution | -19.30 |
| Covariance contribution | 2.92 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.746928 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6292014 92 + 23771897 GG---CAGGGGCAUCUCUGGAACCUAUUGUUCUAGAGGCCCCCACAAUGGAGCUGGGAAAUCAGGAGGGGCGAAAGGCUCGAAGAAGUCGCUGGA ((---(.(((((..(((((((((.....)))))))))))))).......((.((((....))))..(((.(....).))).......)))))... ( -34.70) >DroSec_CAF1 58873 92 + 1 GG---CAGGGGCAUCUCUGGAACCUAUUGUUCUAGAGGCCCCCACAAUGGAGCUGGGAAAUCAGGAGGGGCGAAAGGCUCGAAGAAGUCGCUGGA ((---(.(((((..(((((((((.....)))))))))))))).......((.((((....))))..(((.(....).))).......)))))... ( -34.70) >DroSim_CAF1 61527 92 + 1 GG---CAGGGGCAUCUCUGGAACCUAUUGUUCUAGAGGCCCCCACAAUGUAGCUGGGAAAUCAGGAGGGGCGAAAAGCUCGAAGAAGUCGCUGGA ((---(.(((((..(((((((((.....))))))))))))))..........((((....))))...((((.....)))).........)))... ( -32.40) >DroEre_CAF1 59647 92 + 1 AGGAGCAGGG-CACCUCUGGAACCUAUUGUUCUAGAGGCCCCCACAAUGGAGCUG-GAAAUCAGGAGGAGCGAAAGGCGG-GAGAAGUCGCCGGA ....((.(((-..((((((((((.....))))))))))..))).........(((-.....))).....))....(((((-......)))))... ( -32.50) >DroYak_CAF1 63152 80 + 1 AG---CAGGGCCACCUCCGGAACCUAUUGUUCUAGAG------------GAGCUGGGAAAUCGGGAGGGGCGAAAGGCUGGAAGAAGUCGCCGGU ..---..(((((.(((((.((.((((..((((.....------------))))))))...)).))))))))....((((......)))).))... ( -30.30) >DroAna_CAF1 61060 79 + 1 ------GGGGGCAU--CUAGAAC--AAUAGCCCAAUGGCUCGCACAAUGGAGUCGGGAA-CC-----GGGCGCGGACUUUGGAGAAAAGGCUGCA ------((((((..--.......--....))))..((((((........))))))....-))-----....((((.((((.....)))).)))). ( -23.32) >consensus GG___CAGGGGCAUCUCUGGAACCUAUUGUUCUAGAGGCCCCCACAAUGGAGCUGGGAAAUCAGGAGGGGCGAAAGGCUCGAAGAAGUCGCUGGA .......(((((..(((((((((.....))))))))))))))..........((((....))))....(((((....(.....)...)))))... (-16.38 = -19.30 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:02 2006