Locus 2258

Sequence ID 3L_DroMel_CAF1
Location 6,275,598 – 6,275,695
Length 97
Max. P 0.678957
window3491

overview

Window 1

Location 6,275,598 – 6,275,695
Length 97
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 86.98
Mean single sequence MFE -29.73
Consensus MFE -20.52
Energy contribution -21.64
Covariance contribution 1.12
Combinations/Pair 1.16
Mean z-score -2.02
Structure conservation index 0.69
SVM decision value 0.30
SVM RNA-class probability 0.678957
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6275598 97 + 23771897
G-----CGUACAUCGUUGCCAUGGCAUUUUAUAUUGCCUUGUACGAUUAUAUUGCAUUAUAUUA------UGUGGCUGGGGCACAUGAAGUGAACCGGUGGCAAACAU
(-----((...(((((...((.((((........)))).)).))))).....))).........------(((.(((((..(((.....)))..))))).)))..... ( -30.20)
>DroSec_CAF1 42329 97 + 1
G-----CGUACAUCGUUGCCAUGGCAUUUUAUAUUGCCUUGUACGAUUAUAUUGCAUUAUAUUA------UGUGGCUGGUGCACAUGAAGUGAACCGGUGGCGAACAU
.-----......((((..((.(.((((..((((.(((..((((....))))..))).))))..)------))).)..(((.(((.....))).)))))..)))).... ( -29.70)
>DroSim_CAF1 42989 97 + 1
G-----CGUACAUCGUUGCCAUGGCAUUUUAUAUUGCCUUGUACGAUUAUAUUGCAUUAUAUUA------UGUGGCUGGGGCACAUGAAGUGAACCGGUGGCAAACAU
(-----((...(((((...((.((((........)))).)).))))).....))).........------(((.(((((..(((.....)))..))))).)))..... ( -30.20)
>DroEre_CAF1 42680 96 + 1
GCCCAACAUGCAUCGUUGCCAUGACAUUUUAUGUUGCCCUG------UAUAUUGCAUUAUAUUG------UGUGGCAGGGGCACACGAGGUGAACCGGUGGCAAACAU
((((..((((((....)).)))).(((((..(((.(((((.------....(..(((......)------))..)..))))))))..))))).....).)))...... ( -29.10)
>DroYak_CAF1 46688 103 + 1
G-----CAUACAUCGUUACCAUGGCAUUUUAUAUCGCCUUGUGCGAGUAUAUUGCAUUAUAUUACGAGCAUGUGGCUGGGGCACAUAAAGUGAACCGGUGGCAAACAU
.-----......((((.......(((...((((((((.....)))).)))).)))........))))...(((.(((((..(((.....)))..))))).)))..... ( -29.46)
>consensus
G_____CGUACAUCGUUGCCAUGGCAUUUUAUAUUGCCUUGUACGAUUAUAUUGCAUUAUAUUA______UGUGGCUGGGGCACAUGAAGUGAACCGGUGGCAAACAU
.......(((.(((((...((.((((........)))).)).))))))))....................(((.(((((..(((.....)))..))))).)))..... (-20.52 = -21.64 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:01 2006