Locus 2257

Sequence ID 3L_DroMel_CAF1
Location 6,259,017 – 6,259,114
Length 97
Max. P 0.717284
window3490

overview

Window 0

Location 6,259,017 – 6,259,114
Length 97
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 81.69
Mean single sequence MFE -20.70
Consensus MFE -14.66
Energy contribution -15.14
Covariance contribution 0.48
Combinations/Pair 1.07
Mean z-score -1.76
Structure conservation index 0.71
SVM decision value 0.39
SVM RNA-class probability 0.717284
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6259017 97 + 23771897
UUUUCUUUAAAUCUAAAGAGCAUAGAUAGCUCGCAAAAUGAUGCUCGCAACACUGUGGUGUUGCACCUAGCACAGAGCCCAGAAA--AAACCCAGCGAC
((((((....(((((.......))))).(((((((......)))..(((((((....)))))))..........))))..)))))--)........... ( -23.80)
>DroSec_CAF1 25719 96 + 1
UUUUCUUUAAAUCUAUAAAAUAUAGAUAGCUUGCAAAAUCAUGCUUGCAACACUGUGGUGUUGCACCUAGCCCAGAGCCCAGAAA---AACCCAGCGAC
((((((....(((((((...))))))).(((((((......))).((((((((....)))))))).........))))..)))))---).......... ( -23.10)
>DroSim_CAF1 26310 96 + 1
UUUCCUUUAAAUCUAUAAAGUAUAGAUAGCUUGCAAAAUCAUGCUUGCAACACUGUGGUGUUGCACCUAGCCCAGAGCCCAGAAA---AACCCAGCGAC
((((......(((((((...))))))).(((((((......))).((((((((....)))))))).........))))...))))---........... ( -21.20)
>DroEre_CAF1 26125 90 + 1
AAUU-----UAUCUAAAAAGCAUAAAAAGCUUGCAAAAUGAAGCUUGCAACACUGUAGUGUUGCACCUAGCCCAGAGCCCA----AAAAAGCCAGCGAC
..((-----(((((....)).)))))..(((.((........(((((((((((....))))))))...)))...(....).----.....)).)))... ( -18.60)
>DroYak_CAF1 29510 99 + 1
ACUUCUAAACAUCUAAAAAUUAACAAAAGCUGGCAAAAUGUUGCUGGCUACACUGUAGUGUUGCACCUAGCCCAGAGCCCAGAAAAAAAAAGCAGCGAC
............................((((((((....)))).((((((((....)))).((.....))....)))).............))))... ( -16.80)
>consensus
UUUUCUUUAAAUCUAAAAAGUAUAGAUAGCUUGCAAAAUGAUGCUUGCAACACUGUGGUGUUGCACCUAGCCCAGAGCCCAGAAA__AAACCCAGCGAC
............................(((((((......)))..(((((((....)))))))..........))))..................... (-14.66 = -15.14 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:28:00 2006