Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,253,333 – 6,253,425 |
Length | 92 |
Max. P | 0.999585 |
Location | 6,253,333 – 6,253,425 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 98.71 |
Mean single sequence MFE | -43.33 |
Consensus MFE | -35.83 |
Energy contribution | -41.83 |
Covariance contribution | 6.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.80 |
Structure conservation index | 0.83 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6253333 92 + 23771897 CUGGCCGCCUCAAUCUGCGGCAUCAUCUCGAGGCGAUC--UGGCCAAGAGCCGUGAGGCUGCGUGAGCCGUCUUGGCCAAGUCUGGCAUUUUCG ...((((((((..................)))))((..--((((((((((((....))).((....))..)))))))))..)).)))....... ( -43.77) >DroSec_CAF1 19073 92 + 1 CUGGCCGCCUCAAUCUGCGGCAUCAUCUCGAGGCGAUC--UGGCCAAGAGCCGUGAGGCUGCGUGAGCCGUCUUGGCCAAGUCUGGCAUUUUCG ...((((((((..................)))))((..--((((((((((((....))).((....))..)))))))))..)).)))....... ( -43.77) >DroSim_CAF1 19205 92 + 1 CUGGCCGCCUCAAUCUGCGGCAUCAUCUCGAGGCGAUC--UGGCCAAGAGCCGUGAGGCUGCGUGAGCCGUCUUGGCCAAGUCUGGCAUUUUCG ...((((((((..................)))))((..--((((((((((((....))).((....))..)))))))))..)).)))....... ( -43.77) >DroEre_CAF1 19049 92 + 1 CUGGCCGCCUCAAUCUGCGGCAUCAUCUCGAGGCGAUC--UGGCCAAGAGCCGUGAGGCUGCGUGAGCCGUCUUGGCCAAGUCUGGCGUUUUCG ...((((((((..................)))))((..--((((((((((((....))).((....))..)))))))))..)).)))....... ( -43.77) >DroYak_CAF1 22304 94 + 1 CUGGCCGCCUCAAUCUGCGGCAUCAUCUCGAGGCGAUCUCUGGCCAAGAGCCGUGAGGCUGCGUGAGCCGUCUUGGCCAAGUCUGGCAUUUUCG ...((((((((..................)))))((.((.((((((((((((....))).((....))..))))))))))))).)))....... ( -41.57) >consensus CUGGCCGCCUCAAUCUGCGGCAUCAUCUCGAGGCGAUC__UGGCCAAGAGCCGUGAGGCUGCGUGAGCCGUCUUGGCCAAGUCUGGCAUUUUCG ...((((((((..................)))))(((...((((((((((((....))).((....))..))))))))).))).)))....... (-35.83 = -41.83 + 6.00)
Location | 6,253,333 – 6,253,425 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 98.71 |
Mean single sequence MFE | -41.40 |
Consensus MFE | -38.92 |
Energy contribution | -38.92 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.91 |
Structure conservation index | 0.94 |
SVM decision value | 3.75 |
SVM RNA-class probability | 0.999585 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6253333 92 - 23771897 CGAAAAUGCCAGACUUGGCCAAGACGGCUCACGCAGCCUCACGGCUCUUGGCCA--GAUCGCCUCGAGAUGAUGCCGCAGAUUGAGGCGGCCAG .......(((.((.((((((((((..((....)).(((....))))))))))))--).))(((((((..((......))..))))))))))... ( -41.60) >DroSec_CAF1 19073 92 - 1 CGAAAAUGCCAGACUUGGCCAAGACGGCUCACGCAGCCUCACGGCUCUUGGCCA--GAUCGCCUCGAGAUGAUGCCGCAGAUUGAGGCGGCCAG .......(((.((.((((((((((..((....)).(((....))))))))))))--).))(((((((..((......))..))))))))))... ( -41.60) >DroSim_CAF1 19205 92 - 1 CGAAAAUGCCAGACUUGGCCAAGACGGCUCACGCAGCCUCACGGCUCUUGGCCA--GAUCGCCUCGAGAUGAUGCCGCAGAUUGAGGCGGCCAG .......(((.((.((((((((((..((....)).(((....))))))))))))--).))(((((((..((......))..))))))))))... ( -41.60) >DroEre_CAF1 19049 92 - 1 CGAAAACGCCAGACUUGGCCAAGACGGCUCACGCAGCCUCACGGCUCUUGGCCA--GAUCGCCUCGAGAUGAUGCCGCAGAUUGAGGCGGCCAG .......(((.((.((((((((((..((....)).(((....))))))))))))--).))(((((((..((......))..))))))))))... ( -41.90) >DroYak_CAF1 22304 94 - 1 CGAAAAUGCCAGACUUGGCCAAGACGGCUCACGCAGCCUCACGGCUCUUGGCCAGAGAUCGCCUCGAGAUGAUGCCGCAGAUUGAGGCGGCCAG .......(((.(((((((((((((..((....)).(((....)))))))))))).)).))(((((((..((......))..))))))))))... ( -40.30) >consensus CGAAAAUGCCAGACUUGGCCAAGACGGCUCACGCAGCCUCACGGCUCUUGGCCA__GAUCGCCUCGAGAUGAUGCCGCAGAUUGAGGCGGCCAG .......(((.((..(((((((((..((....)).(((....))))))))))))....))(((((((..((......))..))))))))))... (-38.92 = -38.92 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:53 2006