Locus 2253

Sequence ID 3L_DroMel_CAF1
Location 6,252,161 – 6,252,268
Length 107
Max. P 0.882405
window3482

overview

Window 2

Location 6,252,161 – 6,252,268
Length 107
Sequences 4
Columns 119
Reading direction reverse
Mean pairwise identity 79.35
Mean single sequence MFE -25.09
Consensus MFE -18.35
Energy contribution -17.72
Covariance contribution -0.63
Combinations/Pair 1.37
Mean z-score -1.89
Structure conservation index 0.73
SVM decision value 0.92
SVM RNA-class probability 0.882405
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6252161 107 - 23771897
------------CAUGCUCUGUAUGUUAUCUAUCCACUUAACCCUUAAUUUUUGAGUAGAUAGUCAACACCUCAUUGAACUUCAUUUUAUGGGGUUGUGUAUGCCAAGCAAUUUCGGUC
------------..((((..(((((((..(((((.((((((..........)))))).)))))..)))(((((((.(((.....))).))))))).....))))..))))......... ( -24.90)
>DroSec_CAF1 17903 107 - 1
------------CAUGCUCUGUAUGUUAUCUACCCACUUAACCCUUACUUUUUGAGUAGAUAGUCAACACCCCAUUGAACUUCAUUUCGUGGGGUUGUGUAUGCCAAGCAAUUUCGGUC
------------..((((..(((((((((((((.((................)).))))))))...(((((((((.(((......))))))))).))).)))))..))))......... ( -26.49)
>DroSim_CAF1 18044 107 - 1
------------CAUGCUCUAUAUGCUAUCUACCAGCUUAACCCUUACUUUUUGAGUAGAUAGUCAAAACCCCAUUGAACUUCAUUUCAUGGGGUUGUGUAUGCCAAGCAAUUUCGGUC
------------..((((.(((((((((((((((((...............))).)))))))))...((((((((.(((......)))))))))))..)))))...))))......... ( -28.06)
>DroYak_CAF1 19186 112 - 1
AAUUUGUUCUUCCAUGCUCUGUGUGUUAUCUAA-----AAAACUUUACCUUCUGAGUAGAUGGUCGAAGCCUCAUUGAACUUCAUUUCAUCGGCUUG--CAUCCUAAGCGAAUUCGGCC
..............(((((.(((.(((......-----..)))..))).....)))))...((((((((((....((((......))))..)))(((--(.......)))).))))))) ( -20.90)
>consensus
____________CAUGCUCUGUAUGUUAUCUACCCACUUAACCCUUACUUUUUGAGUAGAUAGUCAAAACCCCAUUGAACUUCAUUUCAUGGGGUUGUGUAUGCCAAGCAAUUUCGGUC
..............((((..(((((((((((((......................)))))))).....(((((((.(((......))))))))))....)))))..))))......... (-18.35 = -17.72 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:51 2006