Locus 2252

Sequence ID 3L_DroMel_CAF1
Location 6,247,447 – 6,247,545
Length 98
Max. P 0.530508
window3481

overview

Window 1

Location 6,247,447 – 6,247,545
Length 98
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 82.11
Mean single sequence MFE -14.99
Consensus MFE -10.05
Energy contribution -9.88
Covariance contribution -0.16
Combinations/Pair 1.19
Mean z-score -1.50
Structure conservation index 0.67
SVM decision value -0.01
SVM RNA-class probability 0.530508
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6247447 98 + 23771897
CCUAUGUCGAUUUCAUAUAAAUUGUCAAUAUUUGACACAUUUACGUGGCGCUGUAAAAACCAAAAAAAAA-------GAAAAGCAAUGAAAAACCGAUCAGGAAA
(((..((((...(((..((((((((((.....))))).)))))..))).(((..................-------....)))..........)))).)))... ( -15.85)
>DroSec_CAF1 13368 94 + 1
CCUAUGUCGAUUUCAUAUAAAUUGUCAAUAUUUGACACAUUUACGUGACGCUGUAAAAACCAAAAAAA-----------AAAGCAAUGAAAAACCGAUCAGGAAA
(((..((((...(((..((((((((((.....))))).)))))..))).(((................-----------..)))..........)))).)))... ( -16.97)
>DroSim_CAF1 13387 94 + 1
CCUAUGUCGAUUUCAUAUAAAUUGUCAAUAUUUGACACAUUUACGUGGCGCUGUAAAAACAAAAAAAA-----------AAAGGAAUGAAAAACCGAUCAGGAAA
(((..((((.((((((......(((((.....)))))..((((((......))))))...........-----------......))))))...)))).)))... ( -14.80)
>DroEre_CAF1 13317 102 + 1
CCUAUGUCGAUUUCAUAUAAAUUGUCAAUAUUUGACACAUUUACGUGGCGCAGCAAUAGCCAAGGAAAAACAAA---AAAAAGAAAAGGAAAACCGAUCAGGAAA
(((..((((.((((...((((((((((.....))))).)))))(.((((.........)))).)..........---...........))))..)))).)))... ( -17.70)
>DroYak_CAF1 14210 105 + 1
CCUAUGUCGAUUUCAUAUAAAUUGUCAAUAUUUGACACAUUUACGUGGCGCAGCAAAAACCAAAAAAAAAAAAACAGAAAAUUAAAAGAAAAACCGAUCAGGAAA
(((..((((....((..((((((((((.....))))).)))))..))((...))........................................)))).)))... ( -13.40)
>DroAna_CAF1 13702 81 + 1
CCUAUGUCGAUUUCAUAUAAAUUGUCAAUAUUUGACACAUAUACCUGGUGCAGCAAUAA--------A-----------AA-----GGCAAAAACGGGCAAGAAA
..........((((.((((...(((((.....)))))..))))((((.(((........--------.-----------..-----.)))....))))...)))) ( -11.20)
>consensus
CCUAUGUCGAUUUCAUAUAAAUUGUCAAUAUUUGACACAUUUACGUGGCGCAGCAAAAACCAAAAAAA___________AAAGAAAUGAAAAACCGAUCAGGAAA
(((..((((....((..((((((((((.....))))).)))))..))((...))........................................)))).)))... (-10.05 =  -9.88 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:50 2006