| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,245,292 – 6,245,392 |
| Length | 100 |
| Max. P | 0.959680 |
| Location | 6,245,292 – 6,245,392 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 90.76 |
| Mean single sequence MFE | -21.05 |
| Consensus MFE | -19.85 |
| Energy contribution | -20.48 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.94 |
| SVM decision value | 1.50 |
| SVM RNA-class probability | 0.959680 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6245292 100 + 23771897 AUGUUUCCUUGUCCAUUAGGAAACGACAAAUGCAAUAAUUUGUCUUGCUUAAGUCCCACAA-ACAUUGCACUUGUCAACUGU-AAGUUUUCCCCCAGCUUUC ..(((((((........)))))))(((((.((((((..(((((...((....))...))))-).)))))).)))))......-(((((.......))))).. ( -23.80) >DroSec_CAF1 11181 100 + 1 AAGUUUCCUUGCCCAUUAGUAAACGGCAAUUGCAAUAAUUUGUCUUGCUCAAGCCCCACAA-ACAUUGCACUUGUCAACUGU-GAGUUUUCCCCCAGCUUUC ..((((.((........)).))))(((((.((((((..(((((...((....))...))))-).)))))).)))))..(((.-(........).)))..... ( -18.60) >DroSim_CAF1 11208 100 + 1 AUGUUUCCUUGCCCAUUAGGAAACGGCAAUUGCUAUAAUUUGUCAUGCUCAAGCCCCACAA-ACAUUGCACUUGUCAACUGU-GAGUUUUCCCCCAGCUUUC ..(((((((........)))))))(((((.(((.....(((((...((....))...))))-)....))).)))))..(((.-(........).)))..... ( -22.00) >DroYak_CAF1 11849 102 + 1 AUGUUUCCUGGCCCAUUAAGAAACGGCAAUUGCCAUAAUUUGUCUUGCUCAAGCCCCACAACACAUUGCACUUGUCAACUGAGGAGUUUUCCCCUCGCUUUU ..(((((.(((....))).)))))(((((.(((.((...((((...((....))...))))...)).))).)))))....((((........))))...... ( -19.80) >consensus AUGUUUCCUUGCCCAUUAGGAAACGGCAAUUGCAAUAAUUUGUCUUGCUCAAGCCCCACAA_ACAUUGCACUUGUCAACUGU_GAGUUUUCCCCCAGCUUUC ..(((((((........)))))))(((((.((((((...((((...((....))...))))...)))))).)))))((((....)))).............. (-19.85 = -20.48 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:49 2006