Locus 225

Sequence ID 3L_DroMel_CAF1
Location 622,274 – 622,370
Length 96
Max. P 0.558193
window335

overview

Window 5

Location 622,274 – 622,370
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -17.60
Consensus MFE -16.66
Energy contribution -16.50
Covariance contribution -0.16
Combinations/Pair 1.05
Mean z-score -1.20
Structure conservation index 0.95
SVM decision value 0.05
SVM RNA-class probability 0.558193
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 622274 96 + 23771897
ACAACACUCCUCCGCUUUUGGAUCCAGUAGAUCCCCCCAGCGAUCUGCGGCCAUAAAUAACCAGUAAAGCCUAUGGAAUUUCCUAUAAAUAAGUUC
..(((.....((((....))))(((((((((((........)))))))(((.................)))..))))...............))). ( -17.43)
>DroSec_CAF1 33752 96 + 1
ACAACACUCCCCCGCUUUUGGACCCAGUAGAUCCCCCCAGCGAUCUGCGGCCAUAAAUAACCAGUAAAGCCUAUGGAAUUUCCUAUAAAUAAGUUC
.......(((...((((((((.((..(((((((........))))))))))))............)))))....)))................... ( -16.90)
>DroSim_CAF1 32002 96 + 1
ACAACACUCCCCCGCUUUUGGACCCAGUAGAUCCCCCCAGCGAUCUGCGGCCAUAAAUAACCAGUAAAGCCUAUGGAAUUUCCUAUAAAUAAGUUC
.......(((...((((((((.((..(((((((........))))))))))))............)))))....)))................... ( -16.90)
>DroEre_CAF1 35613 96 + 1
ACAACACUCCCCCGCUUUUGGACCCAGUAGAUCCCCCCAGCGAUCUGCGGCCAUAAAUAACCAGUAAAGCCCAUGGAAUUUCCUAUAAAUAAGUUC
.......(((...((((((((.((..(((((((........))))))))))))............)))))....)))................... ( -16.90)
>DroYak_CAF1 37814 96 + 1
ACAACACUCCCCCGCUUUUGGGCCCAGUAGAUCCCCCCAGCGAUCUGCGGCCAUAAAUAACCAGUAAAGCCUAUGGAAUUUCCUAUAAAUAAGUUC
.......(((...(((((..((((..(((((((........))))))))))).............)))))....)))................... ( -19.86)
>consensus
ACAACACUCCCCCGCUUUUGGACCCAGUAGAUCCCCCCAGCGAUCUGCGGCCAUAAAUAACCAGUAAAGCCUAUGGAAUUUCCUAUAAAUAAGUUC
.......(((...((((((((.((..(((((((........))))))))))))............)))))....)))................... (-16.66 = -16.50 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:48 2006