Locus 2248

Sequence ID 3L_DroMel_CAF1
Location 6,239,737 – 6,239,830
Length 93
Max. P 0.756970
window3475

overview

Window 5

Location 6,239,737 – 6,239,830
Length 93
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 70.69
Mean single sequence MFE -23.90
Consensus MFE -11.78
Energy contribution -11.50
Covariance contribution -0.28
Combinations/Pair 1.11
Mean z-score -1.68
Structure conservation index 0.49
SVM decision value 0.49
SVM RNA-class probability 0.756970
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6239737 93 + 23771897
C-----------UGGUGCCGCUGAUGCUGUUGCCGUUGGGCGAUGCUGUUGCCGGCGUAGUUUAGCAAUAAUUAAGUUGUUAAAUUGUUGCACGUAAGUCAAGU
.-----------....((((..(((((.((((((....)))))))).)))..)))).((((((((((((......))))))))))))(((.((....))))).. ( -29.50)
>DroVir_CAF1 6423 81 + 1
----------------------GUUGCUGUUGCU-UGUGUUGUUGUUGUUGCUGACGUAGUUUAGCAAUAAUUAAGUUGUUAAAUUGUUGCACGUAAGUCAAGU
----------------------...(((...(((-(((((.((.(((......))).((((((((((((......))))))))))))..))))))))))..))) ( -16.00)
>DroPse_CAF1 12402 96 + 1
CUGCUCCCUCUUUCGUGCUGC------UGCUGCAGGUUGCA--GGUUGUUGCUCGCGUAGUUUAGCAAUAAUUAAGUUGUUAAAUUGUUGCACGUAAGUCAAGA
.........(((.(((((.((------(((.((..((.((.--....)).))..)))))))((((((((......))))))))......))))).)))...... ( -25.10)
>DroSec_CAF1 5730 74 + 1
C-----------UGGUGCCGCUGAUGCU-------------------GUUGCCGGCGUAGUUUAGCAAUAAUUAAGUUGUUAAAUUGUUGCACGUAAGUCAAGU
.-----------..(((((((((..((.-------------------...)))))))((((((((((((......))))))))))))..))))........... ( -21.80)
>DroSim_CAF1 5737 74 + 1
C-----------UGGUGCCGCUGAUGCU-------------------GUUGCCGGCGUAGUUUAGCAAUAAUUAAGUUGUUAAAUUGUUGCACGUAAGUCAAGU
.-----------..(((((((((..((.-------------------...)))))))((((((((((((......))))))))))))..))))........... ( -21.80)
>DroAna_CAF1 6122 85 + 1
-------------------GCCGAGGCUGUCGUUGUGGGCUGGUGUUGUUGCCGGCGUAGUUUAGCAAUAAUUAAGUUGUUAAAUUGUUGCACGUAAGUCAGUC
-------------------.....(((((.(..((((.((((((......)))))).((((((((((((......))))))))))))...))))...).))))) ( -29.20)
>consensus
C___________UGGUGCCGCUGAUGCUGUUGC__U__G____UGUUGUUGCCGGCGUAGUUUAGCAAUAAUUAAGUUGUUAAAUUGUUGCACGUAAGUCAAGU
................................................((((..(((((((((((((((......))))))))))).....))))..).))).. (-11.78 = -11.50 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:44 2006