Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 6,238,537 – 6,238,653 |
Length | 116 |
Max. P | 0.631291 |
Location | 6,238,537 – 6,238,653 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 81.66 |
Mean single sequence MFE | -33.14 |
Consensus MFE | -20.63 |
Energy contribution | -20.51 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.26 |
Mean z-score | -1.84 |
Structure conservation index | 0.62 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6238537 116 + 23771897 UUCAAGAUUUACUGGCGCCAUCUAG-GGCCUUAUACUUGAGCCAGUUGCGCUUAUAAAAAAUGCCGCUAGGGGCGCUAAAAAGCAAUGUGUAGAAUACAUUUGACGUGUAGAAGACA .......((((((((((((.(((((-(((........((((((....).)))))........))).))))))))))))......(((((((...)))))))......)))))..... ( -32.99) >DroSec_CAF1 4602 117 + 1 UUCAAGAGAUACUAGCGCCAUCUAGCGGCCUUUUUCCUAAUACAGUUCCGCUUAUGAAAACUGCCGCUAGAGGCGCUAGAAAACAAUGUGUAGAAUACGUUUGACGUGUAGAAGACA (((........((((((((.(((((((((..(((((.(((...........))).)))))..)))))))))))))))))...............(((((.....))))).))).... ( -41.10) >DroSim_CAF1 4599 117 + 1 UUCAAGAGAUACUGGCGCCAUCUAGCGGCCUCUUGCUUAAUACAGUUGCGCCUUUGAUAACUGCCGCUAGGGGCGCUAGAAAACAAUGUGUAGAAUACAUUUGACGUGUAGAAGACA ...........((((((((.(((((((((..............(((((((....)).)))))))))))))))))))))).........(((....(((((.....)))))....))) ( -36.23) >DroEre_CAF1 4701 116 + 1 UUUAAAAGAUAGUGGCGGCCUCUAG-UGUCAUAAGCGAAAAUCAGUUGAGCUUAUAAAAACUGCCGCUAGGAGCGCUAAUAAGCAAUGUGUAGAAUAUAUUUGACGUGUAGAAGAGA .........(((((((((((....)-.)))((((((..((.....))..)))))).......))))))).....(((....))).(..(((.(((....))).)))..)........ ( -22.00) >DroYak_CAF1 4884 116 + 1 UAUAAGAGAUACUGGCGCCCUCUAG-GGUCGCUUCCAUAAACCAGUUGCGCUUUCAAAAACUGCCGCUAGGGGCGCUAGAAAGCAGUGUGUAGAAUAUAUUUUACGUGUAGAGUAAA ...........(((((((((.((((-((......))......(((((...........)))))...)))))))))))))......(..(((((((....)))))))..)........ ( -33.40) >consensus UUCAAGAGAUACUGGCGCCAUCUAG_GGCCUUUUGCUUAAAACAGUUGCGCUUAUAAAAACUGCCGCUAGGGGCGCUAGAAAGCAAUGUGUAGAAUACAUUUGACGUGUAGAAGACA ...........((((((((.(((((.(((.................................))).))))))))))))).....(((((((...)))))))................ (-20.63 = -20.51 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:43 2006