Locus 2246

Sequence ID 3L_DroMel_CAF1
Location 6,233,778 – 6,233,871
Length 93
Max. P 0.565689
window3473

overview

Window 3

Location 6,233,778 – 6,233,871
Length 93
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 79.03
Mean single sequence MFE -30.83
Consensus MFE -19.50
Energy contribution -18.70
Covariance contribution -0.80
Combinations/Pair 1.32
Mean z-score -1.38
Structure conservation index 0.63
SVM decision value 0.06
SVM RNA-class probability 0.565689
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6233778 93 - 23771897
-AUU-UUAUCUCA---------CAGGGCGAACAUGGCAUUGACAAGGAUGUGUUCCUCUCGCUGCCCUGCGUUCUCAAUGCCAACGGUGUGACAUCCGUGGUCA
-...-........---------...(((.....(((((((((..((((.....))))..(((......)))...)))))))))((((........)))).))). ( -26.90)
>DroVir_CAF1 25752 94 - 1
-ACUCUCUGUUUA---------CAGGGUGAACAUGGCAUCGAUAAGGAUGUGUUCUUGUCGCUGCCCUGCGUACUAAAUGCCAACGGUGUCACCUCCGUGGUGA
-...(.(((((..---------((.((((..((.((((.(((((((((....))))))))).)))).))..))))...))..))))).)(((((.....))))) ( -33.40)
>DroGri_CAF1 26209 90 - 1
-AUUUU----GUG---------CAGGGUGAACAUGGCAUUGAUAAGGAUGUGUUCUUGUCGCUGCCCUGCGUCCUGAAUGCGAAUGGUGUCACCUCUGUGGUCA
-.....----..(---------((((((((.(((((((.(((((((((....))))))))).)))).(((((.....)))))....)))))))).))))..... ( -32.00)
>DroEre_CAF1 25376 102 - 1
-AUU-UCAUCUUAUGCAUGCUAUAGGGCGAACAUGGCAUUGACAAGGAUGUGUUCCUCUCGCUGCCCUGCAUUCUGAAUGCCAACGGUGUGACAUCCGUGGUCA
-..(-(((....(((((((((....)))).....((((.(((..((((.....)))).))).)))).)))))..)))).((((.(((........))))))).. ( -27.80)
>DroMoj_CAF1 28449 94 - 1
-GCUCUCUUCUUU---------UAGGGCGAGCACGGCAUUGACAAGGACGUGUUCCUCUCGCUGCCGUGCGUGCUGAAUGCCAACGGCGUCACCUCCGUGGUCA
-(((((.......---------.)))))((.(((((...((((.((((.....))))......(((((((((.....))))..)))))))))...))))).)). ( -36.00)
>DroAna_CAF1 25583 95 - 1
CUUAUUUACUCUC---------CAGGGCGAACACGGCAUUGAUAAGGACGUGUUCUUGUCCCUGCCCUGCAUCCUGAAUGCCAACGGUGUGACCUCCGUGGUCA
.............---------(((((....((.((((..((((((((....))))))))..)))).))..)))))...((((.(((........))))))).. ( -28.90)
>consensus
_AUU_UCAUCUUA_________CAGGGCGAACAUGGCAUUGACAAGGAUGUGUUCCUCUCGCUGCCCUGCGUCCUGAAUGCCAACGGUGUCACCUCCGUGGUCA
......................(((((((((((((...((....))..)))))))........))))))..........((((.(((........))))))).. (-19.50 = -18.70 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:42 2006