| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,227,542 – 6,227,633 |
| Length | 91 |
| Max. P | 0.604137 |
| Location | 6,227,542 – 6,227,633 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 83.62 |
| Mean single sequence MFE | -15.53 |
| Consensus MFE | -11.15 |
| Energy contribution | -11.35 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6227542 91 - 23771897 AUUGGCAGCGGCCUAGCGCCGGCAAAAAAAACA------AUAACAAUAAGAGCCAAUUGUUUGUG--AUUAAGUAAACAAAACAAGAUCAGCUAAAAAA------ .(((((..((((.....)))).......(((((------((..............))))))).((--(((..((.......))..))))))))))....------ ( -15.24) >DroSec_CAF1 17749 93 - 1 AUUGGCAGCGGCCUAGCGCCGGCAAAA-AAACA------AUAACAAUAAGAGCCAAUUGUUUGUUAAAUUAAGUAAACAAAACAAGAUCAGCUAAAAAAC----- .(((((..((((.....))))......-.((((------(..(((((........)))))))))).........................))))).....----- ( -15.20) >DroSim_CAF1 18263 93 - 1 AUUGGCAGCGGCCUAGCGCCGGCAAAA-AAACA------AUAACAAUAAAAGCCAAUUGUUUGUUAAAUUAAGUAAACAAAACAAGAUCAGCUAAAAAAC----- .(((((..((((.....))))......-.((((------(..(((((........)))))))))).........................))))).....----- ( -15.20) >DroEre_CAF1 19261 88 - 1 AUUGGCAGCGGCCUAGCGCCGGCAAAAAUAACA------AUAACAGCAAAAGCCAAUUGUUUGUG--AUUAAGUAAACAAAACAAGAUCAACUAAA--------- .(((((..((((.....))))((..........------......))....)))))(((((((..--......)))))))................--------- ( -16.29) >DroYak_CAF1 17923 95 - 1 AUUGGCAGCGGCCUAGCGCCGGCCAAAACAACAACAAUAAUAACAACAAAAGCCAAUUGUUUGUG--AUUAAGUAAACAAAACAAGAUCACCUAAAA-------- .(((((..((((.....)))))))))......((((((.................)))))).(((--(((..((.......))..))))))......-------- ( -17.13) >DroAna_CAF1 18996 88 - 1 AUUGGCAGCGGCCUAGCGCCGGCAACGAAA---------------AUAAAAACAAAUUGUUUGUG--AUUAAGUAAACAAAACAAGAUCAGUUAAAUAAUAACAA ...(((.((......)))))(....)....---------------..........((((((((((--(((..((.......))..)))))..))))))))..... ( -14.10) >consensus AUUGGCAGCGGCCUAGCGCCGGCAAAAAAAACA______AUAACAAUAAAAGCCAAUUGUUUGUG__AUUAAGUAAACAAAACAAGAUCAGCUAAAAAA______ .(((((..((((.....))))...................................(((((((..........)))))))..........))))).......... (-11.15 = -11.35 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:39 2006