| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 6,224,470 – 6,224,572 |
| Length | 102 |
| Max. P | 0.822271 |
| Location | 6,224,470 – 6,224,572 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 77.15 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -17.42 |
| Energy contribution | -18.45 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.822271 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 6224470 102 + 23771897 AAUGUUUAACGGAUGGCUGGCGUA-----UAGACA-----AUGUGCCACAUCGAAUUACGUCAAGAUUGUGCGAAUUAUCUGCACUGAUGACUCACCUUGAUGUGUCGGUCA .............(((((((((((-----((....-----.))))).(((((((.....((((.....(((((.......)))))...)))).....))))))))))))))) ( -27.90) >DroSec_CAF1 14705 102 + 1 AAUAUUUAACUAAUGGCUGGCAUA-----UAGACA-----AUGUGCCACAUCAAAUUACGUCAAGAUUGUGCGAAUUAUCUGCACUGGUGACUCACCUUGAUGUGUCGGUCA .............(((((((((((-----(.....-----))))))((((((((.....((((.....(((((.......)))))...)))).....)))))))).)))))) ( -29.70) >DroSim_CAF1 14870 102 + 1 AAUGUUUAACGAAUGGCUGGCAUA-----UAGACA-----AUGUGCCACAUCGAAUUACGUCAAGAUUGUGCGAAUUAUCUGCACUGGUGACUCACCUUGAUGUGUCGGUCA .............(((((((((((-----(.....-----))))))))...(((..(((((((((...(((((.......))))).(....)....)))))))))))))))) ( -30.50) >DroEre_CAF1 16174 96 + 1 AAUGUUUAACGCAUGGCUGACGUA-----UGGACA-----AUGUGCUAAACCAAAUU------AGACAGUGCGAAUUAUCUGCACAGGUGACUCACCUUGAUGUGUCGGUCA .((((.....))))((((((((((-----(.((..-----.(((.((((......))------)))))(((((.......))))).((((...)))))).))))))))))). ( -25.10) >DroYak_CAF1 14868 102 + 1 AAUGUUUAACGGAUGGCUGACGUA-----UAGACA-----AUGUGCCAAAUCAAAUUACGUUAAGAUUGUGCGAAUUAUUCGCACCAGUGACUCACCUUGAUGUGUCGGUCA .............(((((((((((-----((....-----.)))))...........((((((((...((((((.....))))))..(((...))))))))))))))))))) ( -28.70) >DroAna_CAF1 15714 97 + 1 GAUUUGCCACGGAUGAUUGGAGCAACAUGGUGGCACAUGUAGGUGCCACAUCCAGUUAUGUAAAGACAG---------------AUAGUGACUCACCUUGAUGUGCCGGUCA .((((((...(.(((((((((........(((((((......))))))).))))))))).)...).)))---------------))..((((((((......)))..))))) ( -28.50) >consensus AAUGUUUAACGGAUGGCUGGCGUA_____UAGACA_____AUGUGCCACAUCAAAUUACGUCAAGAUUGUGCGAAUUAUCUGCACUGGUGACUCACCUUGAUGUGUCGGUCA .............((((((((...........(((......)))...(((((((.....((((.....(((((.......)))))...)))).....))))))))))))))) (-17.42 = -18.45 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:35 2006