Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 620,536 – 620,630 |
Length | 94 |
Max. P | 0.999113 |
Location | 620,536 – 620,630 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 86.19 |
Mean single sequence MFE | -26.72 |
Consensus MFE | -22.98 |
Energy contribution | -23.18 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -3.05 |
Structure conservation index | 0.86 |
SVM decision value | 3.38 |
SVM RNA-class probability | 0.999113 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 620536 94 + 23771897 GUCGUUGUCGACGUCUUUUUCCGACAUCUAACCAAGUCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCACAUUCACA------------------UCCAUCC ((((....)))).........((((..........))))(((((((....)))))))((((((((...))))))))...........------------------....... ( -23.10) >DroSec_CAF1 31804 112 + 1 GUCGUUGUCGACGUCUCUUUCCGACGUCUAACCAAGCCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCAUAUCCACAUCCACAACCACGUCACGUUCCAUCC ((.(((((.((((((.......))))))......(((((.(((((...((.....)).....))))))))))..................))))).)).............. ( -29.10) >DroSim_CAF1 30214 106 + 1 GUCGUUGUCGACGUCUCUUUCCGACGUCUAACCAAGCCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCA------CAUCCACAACCACGUCCACGUCCAUCC ((.(((((.((((((.......))))))......(((((.(((((...((.....)).....)))))))))).......------.....))))).)).............. ( -29.10) >DroEre_CAF1 34204 112 + 1 GUCGUUGUCGACGUCUUUUUCCGACGUCUAACCAAGCCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCACAUCCACAUCCACAUCCACGUCCGCGUCCAUCC (.(((.(.(((((((.......))))))......(((((.(((((...((.....)).....))))))))))..........................).).))).)..... ( -27.00) >DroYak_CAF1 35985 100 + 1 GUCGUUGUCGACGUCUUUUUCCGACGUCUAACCAAGCCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCACAUCCACAUCCA------------CGUCCAUCC ((((....))))..........(((((............(((((((....)))))))((((((((...))))))))..............)------------))))..... ( -25.30) >consensus GUCGUUGUCGACGUCUUUUUCCGACGUCUAACCAAGCCGAGUGGUACCAGUACUACUAUAUAGCCACCGGCUAUAUCCACAUCCACAUCCACA_CCACGUC__CGUCCAUCC ...((((..((((((.......)))))))))).......(((((((....)))))))((((((((...)))))))).................................... (-22.98 = -23.18 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:47 2006