Locus 2238

Sequence ID 3L_DroMel_CAF1
Location 6,218,936 – 6,219,056
Length 120
Max. P 0.550491
window3463

overview

Window 3

Location 6,218,936 – 6,219,056
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 75.74
Mean single sequence MFE -40.34
Consensus MFE -23.82
Energy contribution -21.83
Covariance contribution -1.99
Combinations/Pair 1.52
Mean z-score -1.40
Structure conservation index 0.59
SVM decision value 0.03
SVM RNA-class probability 0.550491
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 6218936 120 - 23771897
UGGUCAUUAUCUACAGUGAGUUCACGUCCAUGUUGGUGGACCGCGCCAUGCAGUUUGGCACCAGUUCAAAUGUUCAUGCCCUGCCACUUUUCGGAGGUGGUAAAACACUGUAAGUACUCA
.......((..(((((((...((((.(((.....(((((.....((((.......))))..(((..((........))..))))))))....))).)))).....)))))))..)).... ( -33.70)
>DroVir_CAF1 9003 119 - 1
UGGUCAUUGUUUAUAGUGAAUUUACUGCCAUGUUGGUGGAUCGUGCCAUGCAAGUGGGCACCAGCUCGACGGUACAUGCCCUGCCCCUUUUGGGAGGCGGCAAGAAAUUGUGAGUAUCA-
(((((((((....))))))......((((...(((((((......)))).)))...)))))))((((.(((((...((((((..(((....))).)).))))....)))))))))....- ( -34.80)
>DroGri_CAF1 9092 118 - 1
UGGUGAUUGUAUACAGUGAAUUCACCGCCAUGCUGGUGGACAGGGCCAUACAAGUGGGCACCAGCUCAACGGUGCACGCCCUGCCCAUCUUUGGGGGCGGCAAGAAACUGUAAGU-UAA-
...........((((((.......(((((.....(((((.(((((((((....))).(((((........)))))..)))))).)))))......)))))......))))))...-...- ( -45.92)
>DroWil_CAF1 9698 117 - 1
UGGUCAUCAUUUAUAGUGAAUUCACAUCCAUGCUGGUGGAUCGUGCCAUGGACUAUGGUACUAGCUCCAAUGUAAAUGCCUUGCCUCUAUUUGGCGGUGGCAAAGUAUUGUGAGUAG---
.((((.((((.....)))).....((((......))))))))((((((((...))))))))..(((((((((....(((((((((.......))))).))))...))))).))))..--- ( -36.10)
>DroMoj_CAF1 9182 120 - 1
UGGUCAUUGUCUACAGUGAGUUUACGGCGAUGUUGGUGGAUCGUGCCAUGCAAGUGGGCACCAGCUCAACGGUGCAUGCCCUGCCCAUUUUCGGGGGCGGCAAGAAACUGUGAGUGCCCC
...((((((....))))))......((((....((((...((.(((((((((..(((((....)))))....)))))((((...((......)))))))))).)).))))....)))).. ( -41.10)
>DroAna_CAF1 10008 118 - 1
UGGUCAUCAUCUACAGCGAGUUCACCUCUAUGCUAGUGGACAGGGCCAUGGUCUUUGGGACCAGCUCCAAGGUCCAUGCCUUGCCACUUUUUGGUGGCGGAAAAACGCUGUAAGUAUC--
...........(((((((..(((.((.(((....(((((.((((((.((((.(((((((......))))))).)))))))))))))))...))).)).)))....)))))))......-- ( -50.40)
>consensus
UGGUCAUUAUCUACAGUGAAUUCACCGCCAUGCUGGUGGACCGUGCCAUGCAAGUGGGCACCAGCUCAAAGGUACAUGCCCUGCCCCUUUUUGGAGGCGGCAAAAAACUGUAAGUAUC__
...........((((((......((((....((((((.......(((.........)))))))))....))))...((((((.((.......)).)).))))....))))))........ (-23.82 = -21.83 +  -1.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:33 2006